Strain Fitness in Sinorhizobium meliloti 1021 around SMa0664

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0662 and SMa0663 are separated by 114 nucleotidesSMa0663 and SMa0664 are separated by 140 nucleotidesSMa0664 and SMa0665 are separated by 33 nucleotides SMa0662: SMa0662 - transcriptional regulator FixK, at 350,925 to 351,560 SMa0662 SMa0663: SMa0663 - hypothetical protein, at 351,675 to 351,944 SMa0663 SMa0664: SMa0664 - hypothetical protein, at 352,085 to 353,842 SMa0664 SMa0665: SMa0665 - hypothetical protein, at 353,876 to 355,030 SMa0665 Position (kb) 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 351.222 kb on + strand, within SMa0662at 351.386 kb on + strand, within SMa0662at 351.386 kb on + strand, within SMa0662at 351.387 kb on - strand, within SMa0662at 351.389 kb on - strand, within SMa0662at 351.419 kb on - strand, within SMa0662at 351.419 kb on - strand, within SMa0662at 351.419 kb on - strand, within SMa0662at 351.448 kb on + strand, within SMa0662at 351.522 kb on + strandat 351.522 kb on + strandat 351.522 kb on + strandat 351.522 kb on + strandat 351.523 kb on - strandat 351.524 kb on + strandat 351.525 kb on - strandat 351.525 kb on - strandat 351.527 kb on - strandat 351.527 kb on - strandat 351.554 kb on + strandat 351.634 kb on - strandat 351.705 kb on + strand, within SMa0663at 351.706 kb on - strand, within SMa0663at 351.732 kb on + strand, within SMa0663at 351.732 kb on + strand, within SMa0663at 351.996 kb on + strandat 352.014 kb on + strandat 352.026 kb on - strandat 352.026 kb on - strandat 352.027 kb on + strandat 352.028 kb on - strandat 352.035 kb on + strandat 352.037 kb on + strandat 352.158 kb on + strandat 352.227 kb on - strandat 352.418 kb on - strand, within SMa0664at 352.479 kb on + strand, within SMa0664at 352.584 kb on + strand, within SMa0664at 352.584 kb on + strand, within SMa0664at 352.731 kb on + strand, within SMa0664at 352.731 kb on + strand, within SMa0664at 352.894 kb on - strand, within SMa0664at 352.935 kb on - strand, within SMa0664at 352.935 kb on - strand, within SMa0664at 352.945 kb on - strand, within SMa0664at 352.947 kb on + strand, within SMa0664at 352.948 kb on - strand, within SMa0664at 352.948 kb on - strand, within SMa0664at 352.971 kb on + strand, within SMa0664at 352.972 kb on - strand, within SMa0664at 353.000 kb on - strand, within SMa0664at 353.084 kb on + strand, within SMa0664at 353.084 kb on + strand, within SMa0664at 353.085 kb on - strand, within SMa0664at 353.085 kb on - strand, within SMa0664at 353.085 kb on - strand, within SMa0664at 353.106 kb on - strand, within SMa0664at 353.190 kb on - strand, within SMa0664at 353.208 kb on + strand, within SMa0664at 353.208 kb on + strand, within SMa0664at 353.222 kb on + strand, within SMa0664at 353.223 kb on - strand, within SMa0664at 353.340 kb on + strand, within SMa0664at 353.340 kb on + strand, within SMa0664at 353.356 kb on + strand, within SMa0664at 353.356 kb on + strand, within SMa0664at 353.356 kb on + strand, within SMa0664at 353.357 kb on - strand, within SMa0664at 353.357 kb on - strand, within SMa0664at 353.381 kb on - strand, within SMa0664at 353.411 kb on + strand, within SMa0664at 353.412 kb on - strand, within SMa0664at 353.417 kb on - strand, within SMa0664at 353.417 kb on - strand, within SMa0664at 353.502 kb on + strand, within SMa0664at 353.571 kb on - strand, within SMa0664at 353.571 kb on - strand, within SMa0664at 353.571 kb on - strand, within SMa0664at 353.571 kb on - strand, within SMa0664at 353.573 kb on - strand, within SMa0664at 353.639 kb on + strand, within SMa0664at 353.763 kb on + strandat 353.799 kb on + strandat 353.824 kb on - strandat 353.877 kb on + strandat 353.877 kb on + strandat 353.877 kb on + strandat 353.877 kb on + strandat 353.878 kb on - strandat 353.878 kb on - strandat 353.937 kb on - strandat 353.961 kb on - strandat 353.971 kb on + strandat 354.109 kb on + strand, within SMa0665at 354.129 kb on - strand, within SMa0665at 354.238 kb on + strand, within SMa0665at 354.239 kb on - strand, within SMa0665at 354.392 kb on - strand, within SMa0665at 354.392 kb on - strand, within SMa0665at 354.573 kb on - strand, within SMa0665at 354.612 kb on + strand, within SMa0665at 354.613 kb on - strand, within SMa0665at 354.646 kb on + strand, within SMa0665at 354.707 kb on + strand, within SMa0665at 354.775 kb on + strand, within SMa0665at 354.775 kb on + strand, within SMa0665at 354.776 kb on - strand, within SMa0665at 354.776 kb on - strand, within SMa0665at 354.840 kb on + strand, within SMa0665at 354.840 kb on + strand, within SMa0665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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351,222 + SMa0662 0.47 -0.2
351,386 + SMa0662 0.72 -1.8
351,386 + SMa0662 0.72 +0.5
351,387 - SMa0662 0.73 -0.3
351,389 - SMa0662 0.73 -0.2
351,419 - SMa0662 0.78 -0.3
351,419 - SMa0662 0.78 -1.1
351,419 - SMa0662 0.78 +0.1
351,448 + SMa0662 0.82 -0.5
351,522 + +0.2
351,522 + +0.4
351,522 + -0.3
351,522 + +0.0
351,523 - -0.2
351,524 + -0.3
351,525 - -0.1
351,525 - -2.1
351,527 - +0.1
351,527 - -0.1
351,554 + +0.7
351,634 - -0.0
351,705 + SMa0663 0.11 -0.2
351,706 - SMa0663 0.11 -0.4
351,732 + SMa0663 0.21 +1.3
351,732 + SMa0663 0.21 +0.4
351,996 + -0.7
352,014 + -0.1
352,026 - +0.8
352,026 - +0.1
352,027 + -0.1
352,028 - -0.3
352,035 + -0.5
352,037 + -0.7
352,158 + -0.4
352,227 - +0.3
352,418 - SMa0664 0.19 +0.7
352,479 + SMa0664 0.22 -0.6
352,584 + SMa0664 0.28 +0.5
352,584 + SMa0664 0.28 -0.3
352,731 + SMa0664 0.37 -0.1
352,731 + SMa0664 0.37 -0.2
352,894 - SMa0664 0.46 -0.2
352,935 - SMa0664 0.48 -0.4
352,935 - SMa0664 0.48 -0.2
352,945 - SMa0664 0.49 +0.8
352,947 + SMa0664 0.49 -0.1
352,948 - SMa0664 0.49 -0.7
352,948 - SMa0664 0.49 -0.0
352,971 + SMa0664 0.50 -0.0
352,972 - SMa0664 0.50 -1.8
353,000 - SMa0664 0.52 -0.2
353,084 + SMa0664 0.57 -0.3
353,084 + SMa0664 0.57 -0.8
353,085 - SMa0664 0.57 -0.6
353,085 - SMa0664 0.57 -0.6
353,085 - SMa0664 0.57 -0.3
353,106 - SMa0664 0.58 +0.1
353,190 - SMa0664 0.63 -0.3
353,208 + SMa0664 0.64 -0.2
353,208 + SMa0664 0.64 +0.7
353,222 + SMa0664 0.65 +0.4
353,223 - SMa0664 0.65 -1.1
353,340 + SMa0664 0.71 +0.2
353,340 + SMa0664 0.71 +0.1
353,356 + SMa0664 0.72 -0.2
353,356 + SMa0664 0.72 -1.3
353,356 + SMa0664 0.72 +0.2
353,357 - SMa0664 0.72 -0.2
353,357 - SMa0664 0.72 -0.4
353,381 - SMa0664 0.74 +1.0
353,411 + SMa0664 0.75 +0.2
353,412 - SMa0664 0.75 +0.6
353,417 - SMa0664 0.76 +0.6
353,417 - SMa0664 0.76 +0.1
353,502 + SMa0664 0.81 -0.6
353,571 - SMa0664 0.85 -0.4
353,571 - SMa0664 0.85 +0.6
353,571 - SMa0664 0.85 -0.5
353,571 - SMa0664 0.85 -2.1
353,573 - SMa0664 0.85 -0.4
353,639 + SMa0664 0.88 -0.9
353,763 + -0.2
353,799 + +0.5
353,824 - -0.2
353,877 + +0.4
353,877 + -0.6
353,877 + +0.3
353,877 + -0.1
353,878 - +0.3
353,878 - -0.2
353,937 - +0.1
353,961 - +0.6
353,971 + +0.6
354,109 + SMa0665 0.20 +0.4
354,129 - SMa0665 0.22 -0.8
354,238 + SMa0665 0.31 -0.8
354,239 - SMa0665 0.31 -0.5
354,392 - SMa0665 0.45 +1.2
354,392 - SMa0665 0.45 +2.4
354,573 - SMa0665 0.60 +0.8
354,612 + SMa0665 0.64 +0.1
354,613 - SMa0665 0.64 -0.2
354,646 + SMa0665 0.67 -0.3
354,707 + SMa0665 0.72 -0.2
354,775 + SMa0665 0.78 -3.3
354,775 + SMa0665 0.78 -1.0
354,776 - SMa0665 0.78 -0.3
354,776 - SMa0665 0.78 +1.0
354,840 + SMa0665 0.83 -0.1
354,840 + SMa0665 0.83 +0.3

Or see this region's nucleotide sequence