Strain Fitness in Sinorhizobium meliloti 1021 around SMa0601

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0599 and SMa0601 are separated by 143 nucleotidesSMa0601 and SMa0604 are separated by 621 nucleotides SMa0599: SMa0599 - hypothetical protein, at 318,078 to 319,409 SMa0599 SMa0601: SMa0601 - hypothetical protein, at 319,553 to 321,799 SMa0601 SMa0604: SMa0604 - hypothetical protein, at 322,421 to 323,233 SMa0604 Position (kb) 319 320 321 322Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 318.564 kb on + strand, within SMa0599at 318.784 kb on + strand, within SMa0599at 318.844 kb on + strand, within SMa0599at 318.844 kb on + strand, within SMa0599at 318.844 kb on + strand, within SMa0599at 318.845 kb on - strand, within SMa0599at 318.850 kb on - strand, within SMa0599at 318.850 kb on - strand, within SMa0599at 319.011 kb on - strand, within SMa0599at 319.147 kb on - strand, within SMa0599at 319.147 kb on - strand, within SMa0599at 319.224 kb on - strand, within SMa0599at 319.412 kb on + strandat 319.413 kb on - strandat 319.413 kb on - strandat 319.438 kb on - strandat 319.476 kb on + strandat 319.476 kb on + strandat 319.548 kb on + strandat 319.548 kb on + strandat 319.549 kb on - strandat 319.779 kb on + strand, within SMa0601at 319.779 kb on + strand, within SMa0601at 319.899 kb on + strand, within SMa0601at 319.899 kb on + strand, within SMa0601at 319.900 kb on - strand, within SMa0601at 319.900 kb on - strand, within SMa0601at 319.900 kb on - strand, within SMa0601at 319.900 kb on - strand, within SMa0601at 320.065 kb on - strand, within SMa0601at 320.065 kb on - strand, within SMa0601at 320.065 kb on - strand, within SMa0601at 320.066 kb on - strand, within SMa0601at 320.337 kb on + strand, within SMa0601at 320.338 kb on - strand, within SMa0601at 320.408 kb on - strand, within SMa0601at 320.450 kb on + strand, within SMa0601at 320.450 kb on + strand, within SMa0601at 320.499 kb on + strand, within SMa0601at 320.500 kb on - strandat 320.500 kb on - strand, within SMa0601at 320.735 kb on - strand, within SMa0601at 320.901 kb on - strand, within SMa0601at 321.004 kb on + strand, within SMa0601at 321.073 kb on - strand, within SMa0601at 321.073 kb on - strand, within SMa0601at 321.075 kb on + strand, within SMa0601at 321.075 kb on + strandat 321.075 kb on + strand, within SMa0601at 321.076 kb on - strand, within SMa0601at 321.145 kb on + strand, within SMa0601at 321.223 kb on + strand, within SMa0601at 321.223 kb on + strand, within SMa0601at 321.223 kb on + strand, within SMa0601at 321.224 kb on - strand, within SMa0601at 321.224 kb on - strand, within SMa0601at 321.225 kb on + strand, within SMa0601at 321.225 kb on + strand, within SMa0601at 321.226 kb on - strand, within SMa0601at 321.276 kb on - strand, within SMa0601at 321.276 kb on - strand, within SMa0601at 321.418 kb on + strand, within SMa0601at 321.487 kb on + strand, within SMa0601at 321.487 kb on + strand, within SMa0601at 321.488 kb on - strand, within SMa0601at 321.488 kb on - strand, within SMa0601at 321.488 kb on - strand, within SMa0601at 321.513 kb on + strand, within SMa0601at 321.514 kb on - strand, within SMa0601at 321.514 kb on - strand, within SMa0601at 321.517 kb on - strand, within SMa0601at 321.517 kb on - strand, within SMa0601at 321.619 kb on + strandat 321.620 kb on - strandat 321.621 kb on + strandat 321.621 kb on + strandat 321.621 kb on + strandat 321.622 kb on - strandat 321.622 kb on - strandat 321.669 kb on + strandat 321.669 kb on + strandat 321.670 kb on - strandat 321.670 kb on - strandat 321.670 kb on - strandat 321.811 kb on - strandat 321.922 kb on + strandat 321.922 kb on + strandat 321.995 kb on + strandat 321.996 kb on - strandat 322.002 kb on + strandat 322.002 kb on + strandat 322.002 kb on + strandat 322.008 kb on - strandat 322.030 kb on - strandat 322.044 kb on + strandat 322.045 kb on - strandat 322.373 kb on - strandat 322.400 kb on + strandat 322.400 kb on + strandat 322.401 kb on - strandat 322.401 kb on - strandat 322.401 kb on - strandat 322.403 kb on + strandat 322.403 kb on + strandat 322.403 kb on + strandat 322.404 kb on - strandat 322.404 kb on - strandat 322.617 kb on - strand, within SMa0604at 322.621 kb on + strand, within SMa0604at 322.622 kb on - strand, within SMa0604at 322.664 kb on + strand, within SMa0604at 322.732 kb on + strand, within SMa0604at 322.733 kb on - strand, within SMa0604at 322.733 kb on - strand, within SMa0604at 322.776 kb on - strand, within SMa0604at 322.789 kb on + strand, within SMa0604at 322.789 kb on + strand, within SMa0604at 322.789 kb on + strand, within SMa0604at 322.790 kb on - strand, within SMa0604

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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318,564 + SMa0599 0.36 +0.3
318,784 + SMa0599 0.53 +0.3
318,844 + SMa0599 0.58 +0.5
318,844 + SMa0599 0.58 +0.6
318,844 + SMa0599 0.58 +1.1
318,845 - SMa0599 0.58 -0.2
318,850 - SMa0599 0.58 +0.4
318,850 - SMa0599 0.58 +0.3
319,011 - SMa0599 0.70 -0.1
319,147 - SMa0599 0.80 +0.2
319,147 - SMa0599 0.80 +0.4
319,224 - SMa0599 0.86 +0.2
319,412 + +0.7
319,413 - -2.7
319,413 - -2.9
319,438 - -2.1
319,476 + +0.2
319,476 + +0.3
319,548 + +0.4
319,548 + +0.5
319,549 - -4.6
319,779 + SMa0601 0.10 +0.3
319,779 + SMa0601 0.10 -0.2
319,899 + SMa0601 0.15 +0.6
319,899 + SMa0601 0.15 +1.3
319,900 - SMa0601 0.15 -1.2
319,900 - SMa0601 0.15 -1.3
319,900 - SMa0601 0.15 -2.4
319,900 - SMa0601 0.15 -1.9
320,065 - SMa0601 0.23 -1.2
320,065 - SMa0601 0.23 -1.5
320,065 - SMa0601 0.23 -2.0
320,066 - SMa0601 0.23 -1.5
320,337 + SMa0601 0.35 -0.6
320,338 - SMa0601 0.35 -0.5
320,408 - SMa0601 0.38 +0.3
320,450 + SMa0601 0.40 -0.2
320,450 + SMa0601 0.40 +0.1
320,499 + SMa0601 0.42 +0.5
320,500 - +0.8
320,500 - SMa0601 0.42 -0.9
320,735 - SMa0601 0.53 -1.4
320,901 - SMa0601 0.60 -1.0
321,004 + SMa0601 0.65 +0.5
321,073 - SMa0601 0.68 -1.6
321,073 - SMa0601 0.68 -0.9
321,075 + SMa0601 0.68 -1.1
321,075 + +1.8
321,075 + SMa0601 0.68 +0.2
321,076 - SMa0601 0.68 -1.0
321,145 + SMa0601 0.71 -1.0
321,223 + SMa0601 0.74 +0.0
321,223 + SMa0601 0.74 +1.1
321,223 + SMa0601 0.74 +0.1
321,224 - SMa0601 0.74 -0.5
321,224 - SMa0601 0.74 -1.1
321,225 + SMa0601 0.74 +0.3
321,225 + SMa0601 0.74 -0.7
321,226 - SMa0601 0.74 -0.3
321,276 - SMa0601 0.77 -0.4
321,276 - SMa0601 0.77 -0.7
321,418 + SMa0601 0.83 -0.7
321,487 + SMa0601 0.86 +0.4
321,487 + SMa0601 0.86 -0.4
321,488 - SMa0601 0.86 +0.2
321,488 - SMa0601 0.86 -0.2
321,488 - SMa0601 0.86 -1.0
321,513 + SMa0601 0.87 -0.1
321,514 - SMa0601 0.87 -1.0
321,514 - SMa0601 0.87 +0.9
321,517 - SMa0601 0.87 -2.4
321,517 - SMa0601 0.87 -0.3
321,619 + +0.1
321,620 - -0.1
321,621 + +0.2
321,621 + +0.8
321,621 + +0.4
321,622 - -1.3
321,622 - -0.5
321,669 + +0.4
321,669 + +1.0
321,670 - -0.5
321,670 - +0.2
321,670 - -1.0
321,811 - -2.0
321,922 + -0.0
321,922 + -0.3
321,995 + -1.3
321,996 - -0.2
322,002 + +0.2
322,002 + +0.2
322,002 + -0.4
322,008 - -1.2
322,030 - -3.1
322,044 + -2.9
322,045 - -2.2
322,373 - -0.6
322,400 + -1.9
322,400 + -2.3
322,401 - +0.5
322,401 - -0.4
322,401 - -0.3
322,403 + -0.1
322,403 + +0.2
322,403 + -0.6
322,404 - -1.0
322,404 - -0.2
322,617 - SMa0604 0.24 -0.1
322,621 + SMa0604 0.25 -0.5
322,622 - SMa0604 0.25 +0.1
322,664 + SMa0604 0.30 +0.2
322,732 + SMa0604 0.38 +0.2
322,733 - SMa0604 0.38 -0.0
322,733 - SMa0604 0.38 -0.5
322,776 - SMa0604 0.44 -0.2
322,789 + SMa0604 0.45 +0.7
322,789 + SMa0604 0.45 -0.5
322,789 + SMa0604 0.45 -0.1
322,790 - SMa0604 0.45 -0.4

Or see this region's nucleotide sequence