Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21597 and SM_b21598 are separated by 233 nucleotides SM_b21598 and SM_b21599 are separated by 201 nucleotides SM_b21599 and SM_b21600 are separated by 86 nucleotides
SM_b21597: SM_b21597 - exported oxidoreductase, at 1,137,659 to 1,138,690
_b21597
SM_b21598: SM_b21598 - transcriptional regulator, at 1,138,924 to 1,139,973
_b21598
SM_b21599: SM_b21599 - hypothetical protein, at 1,140,175 to 1,140,474
_b21599
SM_b21600: SM_b21600 - beta-lactamase, at 1,140,561 to 1,141,751
_b21600
Position (kb)
1138
1139
1140 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1137.999 kb on + strand, within SM_b21597 at 1138.060 kb on - strand, within SM_b21597 at 1138.093 kb on - strand, within SM_b21597 at 1138.112 kb on - strand, within SM_b21597 at 1138.245 kb on - strand, within SM_b21597 at 1138.271 kb on + strand, within SM_b21597 at 1138.272 kb on - strand, within SM_b21597 at 1138.280 kb on + strand, within SM_b21597 at 1138.281 kb on - strand, within SM_b21597 at 1138.451 kb on + strand, within SM_b21597 at 1138.853 kb on + strand at 1138.853 kb on + strand at 1138.855 kb on + strand at 1138.881 kb on + strand at 1138.903 kb on + strand at 1138.904 kb on - strand at 1139.056 kb on + strand, within SM_b21598 at 1139.057 kb on - strand, within SM_b21598 at 1139.258 kb on - strand, within SM_b21598 at 1139.333 kb on + strand, within SM_b21598 at 1139.333 kb on + strand, within SM_b21598 at 1139.334 kb on - strand, within SM_b21598 at 1139.355 kb on + strand, within SM_b21598 at 1139.356 kb on - strand, within SM_b21598 at 1139.356 kb on - strand, within SM_b21598 at 1139.516 kb on - strand, within SM_b21598 at 1139.698 kb on + strand, within SM_b21598 at 1139.829 kb on - strand, within SM_b21598 at 1139.976 kb on + strand at 1139.976 kb on + strand at 1139.977 kb on - strand at 1139.977 kb on - strand at 1140.195 kb on - strand at 1140.195 kb on - strand at 1140.328 kb on + strand, within SM_b21599 at 1140.328 kb on + strand, within SM_b21599 at 1140.328 kb on + strand, within SM_b21599 at 1140.328 kb on + strand, within SM_b21599 at 1140.329 kb on - strand, within SM_b21599 at 1140.329 kb on - strand, within SM_b21599 at 1140.329 kb on - strand, within SM_b21599 at 1140.331 kb on - strand, within SM_b21599 at 1140.342 kb on + strand, within SM_b21599 at 1140.343 kb on - strand, within SM_b21599 at 1140.400 kb on + strand, within SM_b21599 at 1140.401 kb on - strand, within SM_b21599 at 1140.470 kb on - strand at 1140.517 kb on - strand at 1140.606 kb on + strand at 1140.613 kb on + strand at 1140.613 kb on + strand at 1140.614 kb on - strand at 1140.614 kb on - strand at 1140.700 kb on + strand, within SM_b21600 at 1140.701 kb on - strand, within SM_b21600 at 1140.853 kb on + strand, within SM_b21600 at 1140.853 kb on + strand, within SM_b21600 at 1140.853 kb on + strand, within SM_b21600 at 1140.853 kb on + strand, within SM_b21600 at 1140.853 kb on + strand, within SM_b21600 at 1140.854 kb on - strand, within SM_b21600 at 1140.854 kb on - strand, within SM_b21600 at 1140.854 kb on - strand, within SM_b21600 at 1140.854 kb on - strand, within SM_b21600 at 1140.854 kb on - strand, within SM_b21600 at 1140.854 kb on - strand at 1140.854 kb on - strand, within SM_b21600 at 1140.854 kb on - strand, within SM_b21600 at 1140.854 kb on - strand, within SM_b21600 at 1140.898 kb on + strand, within SM_b21600 at 1140.898 kb on + strand, within SM_b21600 at 1140.899 kb on - strand, within SM_b21600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,137,999 + SM_b21597 0.33 -0.2 1,138,060 - SM_b21597 0.39 -0.0 1,138,093 - SM_b21597 0.42 -0.1 1,138,112 - SM_b21597 0.44 +0.2 1,138,245 - SM_b21597 0.57 +0.2 1,138,271 + SM_b21597 0.59 -0.3 1,138,272 - SM_b21597 0.59 -0.4 1,138,280 + SM_b21597 0.60 -0.3 1,138,281 - SM_b21597 0.60 -0.7 1,138,451 + SM_b21597 0.77 -0.7 1,138,853 + +1.1 1,138,853 + -0.2 1,138,855 + +0.0 1,138,881 + +0.1 1,138,903 + -1.2 1,138,904 - -0.4 1,139,056 + SM_b21598 0.13 -3.9 1,139,057 - SM_b21598 0.13 -1.6 1,139,258 - SM_b21598 0.32 -2.1 1,139,333 + SM_b21598 0.39 -2.0 1,139,333 + SM_b21598 0.39 -3.0 1,139,334 - SM_b21598 0.39 -2.1 1,139,355 + SM_b21598 0.41 -2.3 1,139,356 - SM_b21598 0.41 -1.6 1,139,356 - SM_b21598 0.41 -1.0 1,139,516 - SM_b21598 0.56 -2.1 1,139,698 + SM_b21598 0.74 -1.5 1,139,829 - SM_b21598 0.86 +1.2 1,139,976 + -0.1 1,139,976 + -0.0 1,139,977 - -0.6 1,139,977 - -0.0 1,140,195 - -0.5 1,140,195 - -0.1 1,140,328 + SM_b21599 0.51 +1.8 1,140,328 + SM_b21599 0.51 -0.0 1,140,328 + SM_b21599 0.51 -0.9 1,140,328 + SM_b21599 0.51 -1.5 1,140,329 - SM_b21599 0.51 +0.6 1,140,329 - SM_b21599 0.51 +0.2 1,140,329 - SM_b21599 0.51 +0.1 1,140,331 - SM_b21599 0.52 +0.5 1,140,342 + SM_b21599 0.56 +0.7 1,140,343 - SM_b21599 0.56 -0.1 1,140,400 + SM_b21599 0.75 +0.3 1,140,401 - SM_b21599 0.75 -0.9 1,140,470 - -0.3 1,140,517 - +0.1 1,140,606 + -0.7 1,140,613 + +0.5 1,140,613 + -0.0 1,140,614 - +0.5 1,140,614 - -0.3 1,140,700 + SM_b21600 0.12 -0.4 1,140,701 - SM_b21600 0.12 +0.8 1,140,853 + SM_b21600 0.25 -1.3 1,140,853 + SM_b21600 0.25 +0.0 1,140,853 + SM_b21600 0.25 -0.9 1,140,853 + SM_b21600 0.25 -0.1 1,140,853 + SM_b21600 0.25 -0.5 1,140,854 - SM_b21600 0.25 +0.6 1,140,854 - SM_b21600 0.25 -0.6 1,140,854 - SM_b21600 0.25 +0.3 1,140,854 - SM_b21600 0.25 -0.1 1,140,854 - SM_b21600 0.25 +0.2 1,140,854 - +1.8 1,140,854 - SM_b21600 0.25 +0.4 1,140,854 - SM_b21600 0.25 +0.1 1,140,854 - SM_b21600 0.25 -0.3 1,140,898 + SM_b21600 0.28 -0.1 1,140,898 + SM_b21600 0.28 +0.5 1,140,899 - SM_b21600 0.28 -0.4
Or see this region's nucleotide sequence