Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21201

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21200 and SM_b21201 overlap by 4 nucleotidesSM_b21201 and SM_b21202 are separated by 272 nucleotides SM_b21200: SM_b21200 - two-component response regulator protein, at 950,520 to 951,863 _b21200 SM_b21201: SM_b21201 - two-component sensor histidine kinase, at 951,860 to 953,680 _b21201 SM_b21202: SM_b21202 - hypothetical protein, at 953,953 to 954,885 _b21202 Position (kb) 951 952 953 954Strain fitness (log2 ratio) -1 0 1 2at 950.954 kb on - strand, within SM_b21200at 950.985 kb on + strand, within SM_b21200at 950.985 kb on + strand, within SM_b21200at 950.985 kb on + strand, within SM_b21200at 951.040 kb on - strand, within SM_b21200at 951.359 kb on + strand, within SM_b21200at 951.360 kb on - strand, within SM_b21200at 951.568 kb on + strand, within SM_b21200at 951.568 kb on + strand, within SM_b21200at 951.729 kb on - strandat 951.729 kb on - strandat 951.770 kb on + strandat 951.770 kb on + strandat 951.771 kb on - strandat 951.771 kb on - strandat 951.978 kb on + strandat 952.001 kb on + strandat 952.001 kb on + strandat 952.002 kb on - strandat 952.029 kb on + strandat 952.246 kb on - strand, within SM_b21201at 952.480 kb on - strand, within SM_b21201at 952.750 kb on + strand, within SM_b21201at 952.750 kb on + strand, within SM_b21201at 952.751 kb on - strand, within SM_b21201at 952.751 kb on - strandat 952.874 kb on - strand, within SM_b21201at 952.874 kb on - strand, within SM_b21201at 952.875 kb on + strand, within SM_b21201at 952.875 kb on + strand, within SM_b21201at 952.875 kb on + strand, within SM_b21201at 952.893 kb on + strand, within SM_b21201at 952.923 kb on - strand, within SM_b21201at 952.987 kb on - strand, within SM_b21201at 953.046 kb on + strand, within SM_b21201at 953.047 kb on - strand, within SM_b21201at 953.110 kb on - strand, within SM_b21201at 953.209 kb on - strand, within SM_b21201at 953.209 kb on - strand, within SM_b21201at 953.211 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.244 kb on + strand, within SM_b21201at 953.245 kb on - strand, within SM_b21201at 953.245 kb on - strand, within SM_b21201at 953.245 kb on - strand, within SM_b21201at 953.331 kb on + strand, within SM_b21201at 953.331 kb on + strand, within SM_b21201at 953.332 kb on - strand, within SM_b21201at 953.332 kb on - strand, within SM_b21201at 953.332 kb on - strand, within SM_b21201at 953.373 kb on + strand, within SM_b21201at 953.373 kb on + strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.374 kb on - strand, within SM_b21201at 953.587 kb on + strandat 953.587 kb on + strandat 953.587 kb on + strandat 953.587 kb on + strandat 953.587 kb on + strandat 953.588 kb on - strandat 953.588 kb on - strandat 953.590 kb on - strandat 953.590 kb on - strandat 953.590 kb on - strandat 953.674 kb on - strandat 953.750 kb on + strandat 953.751 kb on + strandat 953.752 kb on - strandat 953.984 kb on + strandat 953.985 kb on - strandat 954.088 kb on + strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.089 kb on - strand, within SM_b21202at 954.097 kb on + strand, within SM_b21202at 954.097 kb on + strand, within SM_b21202at 954.097 kb on + strand, within SM_b21202at 954.098 kb on - strand, within SM_b21202at 954.098 kb on - strand, within SM_b21202at 954.098 kb on - strand, within SM_b21202at 954.100 kb on + strand, within SM_b21202at 954.100 kb on + strand, within SM_b21202at 954.101 kb on - strand, within SM_b21202at 954.101 kb on - strand, within SM_b21202at 954.139 kb on + strand, within SM_b21202at 954.428 kb on + strand, within SM_b21202at 954.428 kb on + strand, within SM_b21202at 954.434 kb on + strand, within SM_b21202at 954.435 kb on - strand, within SM_b21202at 954.435 kb on - strand, within SM_b21202at 954.478 kb on + strand, within SM_b21202

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
950,954 - SM_b21200 0.32 +0.1
950,985 + SM_b21200 0.35 +0.4
950,985 + SM_b21200 0.35 +0.1
950,985 + SM_b21200 0.35 +0.6
951,040 - SM_b21200 0.39 +0.1
951,359 + SM_b21200 0.62 +0.5
951,360 - SM_b21200 0.62 -0.3
951,568 + SM_b21200 0.78 +0.5
951,568 + SM_b21200 0.78 +0.7
951,729 - +0.4
951,729 - +0.4
951,770 + +0.5
951,770 + -0.3
951,771 - +0.2
951,771 - -1.4
951,978 + +0.4
952,001 + +0.5
952,001 + +0.1
952,002 - +0.2
952,029 + +0.7
952,246 - SM_b21201 0.21 -1.7
952,480 - SM_b21201 0.34 +0.0
952,750 + SM_b21201 0.49 +0.7
952,750 + SM_b21201 0.49 -0.3
952,751 - SM_b21201 0.49 +0.5
952,751 - +0.5
952,874 - SM_b21201 0.56 +0.2
952,874 - SM_b21201 0.56 +0.1
952,875 + SM_b21201 0.56 -0.0
952,875 + SM_b21201 0.56 -0.0
952,875 + SM_b21201 0.56 +0.9
952,893 + SM_b21201 0.57 +0.3
952,923 - SM_b21201 0.58 +0.6
952,987 - SM_b21201 0.62 -0.0
953,046 + SM_b21201 0.65 +0.1
953,047 - SM_b21201 0.65 +0.7
953,110 - SM_b21201 0.69 -1.7
953,209 - SM_b21201 0.74 +1.1
953,209 - SM_b21201 0.74 -0.8
953,211 + SM_b21201 0.74 +0.2
953,244 + SM_b21201 0.76 -0.1
953,244 + SM_b21201 0.76 +0.5
953,244 + SM_b21201 0.76 +1.0
953,244 + SM_b21201 0.76 -0.6
953,245 - SM_b21201 0.76 +0.1
953,245 - SM_b21201 0.76 +0.7
953,245 - SM_b21201 0.76 -0.2
953,331 + SM_b21201 0.81 +0.3
953,331 + SM_b21201 0.81 +0.8
953,332 - SM_b21201 0.81 -0.5
953,332 - SM_b21201 0.81 +0.3
953,332 - SM_b21201 0.81 +0.2
953,373 + SM_b21201 0.83 +0.9
953,373 + SM_b21201 0.83 -0.1
953,374 - SM_b21201 0.83 +0.1
953,374 - SM_b21201 0.83 -0.0
953,374 - SM_b21201 0.83 +0.6
953,374 - SM_b21201 0.83 +0.1
953,374 - SM_b21201 0.83 -0.4
953,374 - SM_b21201 0.83 +0.1
953,374 - SM_b21201 0.83 +0.4
953,587 + +0.7
953,587 + -0.6
953,587 + +0.4
953,587 + +2.1
953,587 + +0.6
953,588 - +1.4
953,588 - +0.2
953,590 - +0.8
953,590 - +0.0
953,590 - -0.2
953,674 - +0.2
953,750 + +0.7
953,751 + -0.6
953,752 - -1.2
953,984 + -0.0
953,985 - -0.5
954,088 + SM_b21202 0.14 +0.6
954,089 - SM_b21202 0.15 +0.8
954,089 - SM_b21202 0.15 -0.2
954,089 - SM_b21202 0.15 +0.0
954,089 - SM_b21202 0.15 +0.3
954,097 + SM_b21202 0.15 -0.2
954,097 + SM_b21202 0.15 -0.1
954,097 + SM_b21202 0.15 -0.4
954,098 - SM_b21202 0.16 +0.3
954,098 - SM_b21202 0.16 +2.1
954,098 - SM_b21202 0.16 +1.8
954,100 + SM_b21202 0.16 -0.2
954,100 + SM_b21202 0.16 +0.2
954,101 - SM_b21202 0.16 +0.4
954,101 - SM_b21202 0.16 +0.4
954,139 + SM_b21202 0.20 +0.3
954,428 + SM_b21202 0.51 -0.4
954,428 + SM_b21202 0.51 +1.5
954,434 + SM_b21202 0.52 -1.5
954,435 - SM_b21202 0.52 +0.7
954,435 - SM_b21202 0.52 -1.7
954,478 + SM_b21202 0.56 -0.1

Or see this region's nucleotide sequence