Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20501

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20500 and SM_b20501 overlap by 4 nucleotidesSM_b20501 and SM_b20502 are separated by 1 nucleotides SM_b20500: SM_b20500 - aldoketo reductase, at 521,187 to 522,182 _b20500 SM_b20501: SM_b20501 - transcriptional regulator, at 522,179 to 523,183 _b20501 SM_b20502: SM_b20502 - sugar ABC transporter permease, at 523,185 to 524,177 _b20502 Position (kb) 522 523 524Strain fitness (log2 ratio) -2 -1 0 1at 521.188 kb on + strandat 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.650 kb on + strand, within SM_b20500at 521.651 kb on - strand, within SM_b20500at 521.651 kb on - strand, within SM_b20500at 521.779 kb on + strand, within SM_b20500at 521.779 kb on + strand, within SM_b20500at 521.780 kb on - strand, within SM_b20500at 521.780 kb on - strand, within SM_b20500at 521.790 kb on - strand, within SM_b20500at 521.790 kb on - strand, within SM_b20500at 521.791 kb on + strand, within SM_b20500at 521.791 kb on + strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 522.279 kb on - strandat 522.492 kb on + strand, within SM_b20501at 522.492 kb on + strand, within SM_b20501at 522.493 kb on - strand, within SM_b20501at 522.697 kb on + strand, within SM_b20501at 522.697 kb on + strand, within SM_b20501at 522.699 kb on + strand, within SM_b20501at 522.699 kb on + strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.785 kb on + strand, within SM_b20501at 522.811 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.815 kb on - strand, within SM_b20501at 522.841 kb on + strand, within SM_b20501at 522.842 kb on - strand, within SM_b20501at 522.842 kb on - strand, within SM_b20501at 523.239 kb on + strandat 523.239 kb on + strandat 523.240 kb on - strandat 523.256 kb on + strandat 523.257 kb on - strandat 523.257 kb on - strandat 523.268 kb on - strandat 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.565 kb on - strand, within SM_b20502at 523.645 kb on + strand, within SM_b20502at 523.646 kb on - strand, within SM_b20502at 523.665 kb on - strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.776 kb on - strand, within SM_b20502at 524.165 kb on + strandat 524.166 kb on - strandat 524.177 kb on + strandat 524.177 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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521,188 + +0.4
521,381 - SM_b20500 0.19 -0.2
521,381 - SM_b20500 0.19 +0.4
521,381 - SM_b20500 0.19 +0.2
521,381 - SM_b20500 0.19 -0.3
521,650 + SM_b20500 0.46 +0.0
521,651 - SM_b20500 0.47 +0.0
521,651 - SM_b20500 0.47 -0.3
521,779 + SM_b20500 0.59 -1.6
521,779 + SM_b20500 0.59 -0.4
521,780 - SM_b20500 0.60 -0.1
521,780 - SM_b20500 0.60 +0.3
521,790 - SM_b20500 0.61 +0.4
521,790 - SM_b20500 0.61 +0.8
521,791 + SM_b20500 0.61 +0.4
521,791 + SM_b20500 0.61 +0.2
521,792 - SM_b20500 0.61 -1.1
521,792 - SM_b20500 0.61 +0.6
521,792 - SM_b20500 0.61 +0.5
522,279 - -1.1
522,492 + SM_b20501 0.31 -1.3
522,492 + SM_b20501 0.31 -0.7
522,493 - SM_b20501 0.31 -0.7
522,697 + SM_b20501 0.52 -0.9
522,697 + SM_b20501 0.52 -2.6
522,699 + SM_b20501 0.52 -2.1
522,699 + SM_b20501 0.52 -2.0
522,700 - SM_b20501 0.52 -1.7
522,700 - SM_b20501 0.52 -1.1
522,700 - SM_b20501 0.52 -1.0
522,785 + SM_b20501 0.60 -0.0
522,811 + SM_b20501 0.63 -1.6
522,814 + SM_b20501 0.63 -1.0
522,814 + SM_b20501 0.63 -1.7
522,814 + SM_b20501 0.63 -0.6
522,815 - SM_b20501 0.63 -1.5
522,841 + SM_b20501 0.66 -1.9
522,842 - SM_b20501 0.66 -2.3
522,842 - SM_b20501 0.66 -1.3
523,239 + -0.1
523,239 + -0.2
523,240 - -0.4
523,256 + -0.8
523,257 - -0.0
523,257 - +0.3
523,268 - -0.2
523,453 + SM_b20502 0.27 +0.4
523,453 + SM_b20502 0.27 -0.1
523,453 + SM_b20502 0.27 -0.3
523,453 + SM_b20502 0.27 +0.2
523,453 + SM_b20502 0.27 +0.8
523,453 + SM_b20502 0.27 -0.0
523,453 + SM_b20502 0.27 +1.3
523,454 - SM_b20502 0.27 +0.1
523,454 - SM_b20502 0.27 -0.2
523,454 - SM_b20502 0.27 -0.1
523,454 - SM_b20502 0.27 +0.4
523,454 - SM_b20502 0.27 -0.3
523,565 - SM_b20502 0.38 +0.3
523,645 + SM_b20502 0.46 -0.2
523,646 - SM_b20502 0.46 -0.5
523,665 - SM_b20502 0.48 +0.1
523,775 + SM_b20502 0.59 +0.9
523,775 + SM_b20502 0.59 -0.7
523,775 + SM_b20502 0.59 -0.2
523,776 - SM_b20502 0.60 +1.4
524,165 + +0.3
524,166 - -1.1
524,177 + +1.0
524,177 + +0.2

Or see this region's nucleotide sequence