Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20479 and SM_b20480 are separated by 6 nucleotides SM_b20480 and SM_b20481 are separated by 123 nucleotides SM_b20481 and SM_b20482 are separated by 1 nucleotides
SM_b20479: SM_b20479 - dipeptide ABC transporter ATP-binding protein, at 493,209 to 494,006
_b20479
SM_b20480: SM_b20480 - transcriptional regulator, at 494,013 to 494,795
_b20480
SM_b20481: SM_b20481 - asparagine synthetase (glutamine amidotransferase) protein, at 494,919 to 496,694
_b20481
SM_b20482: SM_b20482 - hypothetical protein, at 496,696 to 498,483
_b20482
Position (kb) 494
495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 493.959 kb on + strand at 493.959 kb on + strand at 493.960 kb on - strand at 493.962 kb on - strand at 494.084 kb on + strand at 494.085 kb on - strand at 494.128 kb on - strand, within SM_b20480 at 494.215 kb on + strand, within SM_b20480 at 494.215 kb on + strand, within SM_b20480 at 494.368 kb on + strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.469 kb on + strand, within SM_b20480 at 494.470 kb on - strand, within SM_b20480 at 494.632 kb on - strand, within SM_b20480 at 494.744 kb on + strand at 494.744 kb on + strand at 494.745 kb on - strand at 494.764 kb on - strand at 495.153 kb on + strand, within SM_b20481 at 495.361 kb on - strand, within SM_b20481 at 495.362 kb on + strand, within SM_b20481 at 495.374 kb on - strand, within SM_b20481 at 495.465 kb on + strand, within SM_b20481 at 495.465 kb on + strand, within SM_b20481 at 495.466 kb on - strand, within SM_b20481 at 495.886 kb on + strand, within SM_b20481 at 495.961 kb on - strand, within SM_b20481 at 495.979 kb on - strand, within SM_b20481 at 495.979 kb on - strand, within SM_b20481 at 495.979 kb on - strand, within SM_b20481 at 496.018 kb on + strand, within SM_b20481 at 496.019 kb on - strand, within SM_b20481 at 496.229 kb on + strand, within SM_b20481 at 496.230 kb on - strand, within SM_b20481 at 496.268 kb on + strand, within SM_b20481 at 496.268 kb on + strand, within SM_b20481 at 496.269 kb on - strand, within SM_b20481 at 496.269 kb on - strand, within SM_b20481 at 496.304 kb on + strand, within SM_b20481 at 496.304 kb on + strand, within SM_b20481 at 496.305 kb on - strand, within SM_b20481 at 496.476 kb on + strand, within SM_b20481 at 496.477 kb on - strand, within SM_b20481 at 496.501 kb on - strand, within SM_b20481 at 496.501 kb on - strand, within SM_b20481 at 496.584 kb on + strand at 496.584 kb on + strand at 496.585 kb on - strand at 496.585 kb on - strand at 496.690 kb on + strand at 496.692 kb on + strand at 496.692 kb on + strand at 496.693 kb on - strand at 496.693 kb on - strand at 496.693 kb on - strand at 496.693 kb on - strand at 496.785 kb on + strand at 496.957 kb on + strand, within SM_b20482 at 496.958 kb on - strand, within SM_b20482 at 496.962 kb on - strand, within SM_b20482 at 497.027 kb on - strand, within SM_b20482 at 497.048 kb on - strand, within SM_b20482 at 497.048 kb on - strand, within SM_b20482 at 497.131 kb on + strand, within SM_b20482 at 497.131 kb on + strand, within SM_b20482 at 497.131 kb on + strand, within SM_b20482 at 497.132 kb on - strand, within SM_b20482 at 497.402 kb on - strand, within SM_b20482 at 497.402 kb on - strand, within SM_b20482 at 497.402 kb on - strand, within SM_b20482 at 497.430 kb on + strand, within SM_b20482 at 497.430 kb on + strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.542 kb on + strand, within SM_b20482 at 497.543 kb on - strand, within SM_b20482
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 493,959 + +0.5 493,959 + -0.1 493,960 - +0.1 493,962 - +0.5 494,084 + +0.7 494,085 - +0.6 494,128 - SM_b20480 0.15 +3.1 494,215 + SM_b20480 0.26 -0.2 494,215 + SM_b20480 0.26 -0.2 494,368 + SM_b20480 0.45 -0.2 494,369 - SM_b20480 0.45 -0.3 494,369 - SM_b20480 0.45 -1.9 494,369 - SM_b20480 0.45 +0.3 494,370 + SM_b20480 0.46 -0.1 494,370 + SM_b20480 0.46 +0.1 494,370 + SM_b20480 0.46 +1.0 494,370 + SM_b20480 0.46 -0.7 494,370 + SM_b20480 0.46 +1.8 494,370 + SM_b20480 0.46 -0.6 494,371 - SM_b20480 0.46 +0.3 494,371 - SM_b20480 0.46 +0.1 494,371 - SM_b20480 0.46 -0.8 494,371 - SM_b20480 0.46 -0.3 494,371 - SM_b20480 0.46 +0.4 494,469 + SM_b20480 0.58 +0.6 494,470 - SM_b20480 0.58 -0.6 494,632 - SM_b20480 0.79 -0.1 494,744 + -0.5 494,744 + +0.3 494,745 - +0.8 494,764 - +0.1 495,153 + SM_b20481 0.13 +0.3 495,361 - SM_b20481 0.25 -0.3 495,362 + SM_b20481 0.25 +0.0 495,374 - SM_b20481 0.26 +0.3 495,465 + SM_b20481 0.31 +0.1 495,465 + SM_b20481 0.31 +0.5 495,466 - SM_b20481 0.31 +1.0 495,886 + SM_b20481 0.54 -1.6 495,961 - SM_b20481 0.59 +0.2 495,979 - SM_b20481 0.60 +0.0 495,979 - SM_b20481 0.60 -0.1 495,979 - SM_b20481 0.60 +0.9 496,018 + SM_b20481 0.62 -0.2 496,019 - SM_b20481 0.62 -0.7 496,229 + SM_b20481 0.74 -0.2 496,230 - SM_b20481 0.74 -0.4 496,268 + SM_b20481 0.76 +0.3 496,268 + SM_b20481 0.76 -0.1 496,269 - SM_b20481 0.76 -0.1 496,269 - SM_b20481 0.76 +0.2 496,304 + SM_b20481 0.78 -0.6 496,304 + SM_b20481 0.78 -0.1 496,305 - SM_b20481 0.78 -1.0 496,476 + SM_b20481 0.88 -0.6 496,477 - SM_b20481 0.88 +0.0 496,501 - SM_b20481 0.89 +0.1 496,501 - SM_b20481 0.89 -0.5 496,584 + +0.6 496,584 + +0.1 496,585 - -0.3 496,585 - +2.8 496,690 + -0.4 496,692 + -0.5 496,692 + -1.7 496,693 - +1.3 496,693 - -1.6 496,693 - -1.1 496,693 - -0.8 496,785 + -0.8 496,957 + SM_b20482 0.15 +0.4 496,958 - SM_b20482 0.15 +0.2 496,962 - SM_b20482 0.15 -0.2 497,027 - SM_b20482 0.19 -0.2 497,048 - SM_b20482 0.20 -0.6 497,048 - SM_b20482 0.20 +0.2 497,131 + SM_b20482 0.24 -0.1 497,131 + SM_b20482 0.24 -0.2 497,131 + SM_b20482 0.24 -0.6 497,132 - SM_b20482 0.24 -0.3 497,402 - SM_b20482 0.39 +0.1 497,402 - SM_b20482 0.39 -0.2 497,402 - SM_b20482 0.39 +0.1 497,430 + SM_b20482 0.41 -1.5 497,430 + SM_b20482 0.41 +1.7 497,431 - SM_b20482 0.41 +0.1 497,431 - SM_b20482 0.41 -0.3 497,431 - SM_b20482 0.41 +0.4 497,431 - SM_b20482 0.41 -1.3 497,542 + SM_b20482 0.47 -0.0 497,543 - SM_b20482 0.47 -0.7
Or see this region's nucleotide sequence