Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20478 and SM_b20479 overlap by 4 nucleotides SM_b20479 and SM_b20480 are separated by 6 nucleotides SM_b20480 and SM_b20481 are separated by 123 nucleotides
SM_b20478: SM_b20478 - dipeptide ABC transporter permease and ATP-binding protein, at 491,410 to 493,212
_b20478
SM_b20479: SM_b20479 - dipeptide ABC transporter ATP-binding protein, at 493,209 to 494,006
_b20479
SM_b20480: SM_b20480 - transcriptional regulator, at 494,013 to 494,795
_b20480
SM_b20481: SM_b20481 - asparagine synthetase (glutamine amidotransferase) protein, at 494,919 to 496,694
_b20481
Position (kb) 494
495 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 493.082 kb on + strand at 493.106 kb on - strand at 493.295 kb on - strand, within SM_b20479 at 493.295 kb on - strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.497 kb on + strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.498 kb on - strand, within SM_b20479 at 493.649 kb on + strand, within SM_b20479 at 493.833 kb on + strand, within SM_b20479 at 493.833 kb on + strand, within SM_b20479 at 493.834 kb on - strand, within SM_b20479 at 493.834 kb on - strand, within SM_b20479 at 493.896 kb on + strand, within SM_b20479 at 493.897 kb on - strand, within SM_b20479 at 493.959 kb on + strand at 493.959 kb on + strand at 493.960 kb on - strand at 493.962 kb on - strand at 494.084 kb on + strand at 494.085 kb on - strand at 494.128 kb on - strand, within SM_b20480 at 494.215 kb on + strand, within SM_b20480 at 494.215 kb on + strand, within SM_b20480 at 494.368 kb on + strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.469 kb on + strand, within SM_b20480 at 494.470 kb on - strand, within SM_b20480 at 494.632 kb on - strand, within SM_b20480 at 494.744 kb on + strand at 494.744 kb on + strand at 494.745 kb on - strand at 494.764 kb on - strand at 495.153 kb on + strand, within SM_b20481 at 495.361 kb on - strand, within SM_b20481 at 495.362 kb on + strand, within SM_b20481 at 495.374 kb on - strand, within SM_b20481 at 495.465 kb on + strand, within SM_b20481 at 495.465 kb on + strand, within SM_b20481 at 495.466 kb on - strand, within SM_b20481
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 493,082 + -0.3 493,106 - +0.6 493,295 - SM_b20479 0.11 -0.3 493,295 - SM_b20479 0.11 +0.2 493,497 + SM_b20479 0.36 +0.8 493,497 + SM_b20479 0.36 -0.1 493,497 + SM_b20479 0.36 +0.3 493,497 + SM_b20479 0.36 -0.7 493,497 + SM_b20479 0.36 -0.4 493,498 - SM_b20479 0.36 +0.3 493,498 - SM_b20479 0.36 +0.2 493,498 - SM_b20479 0.36 -0.3 493,498 - SM_b20479 0.36 -0.3 493,498 - SM_b20479 0.36 -1.5 493,649 + SM_b20479 0.55 +0.5 493,833 + SM_b20479 0.78 -0.6 493,833 + SM_b20479 0.78 +0.4 493,834 - SM_b20479 0.78 +0.0 493,834 - SM_b20479 0.78 +0.1 493,896 + SM_b20479 0.86 +0.0 493,897 - SM_b20479 0.86 -1.1 493,959 + +0.5 493,959 + -0.1 493,960 - +0.1 493,962 - +0.5 494,084 + +0.7 494,085 - +0.6 494,128 - SM_b20480 0.15 +3.1 494,215 + SM_b20480 0.26 -0.2 494,215 + SM_b20480 0.26 -0.2 494,368 + SM_b20480 0.45 -0.2 494,369 - SM_b20480 0.45 -0.3 494,369 - SM_b20480 0.45 -1.9 494,369 - SM_b20480 0.45 +0.3 494,370 + SM_b20480 0.46 -0.1 494,370 + SM_b20480 0.46 +0.1 494,370 + SM_b20480 0.46 +1.0 494,370 + SM_b20480 0.46 -0.7 494,370 + SM_b20480 0.46 +1.8 494,370 + SM_b20480 0.46 -0.6 494,371 - SM_b20480 0.46 +0.3 494,371 - SM_b20480 0.46 +0.1 494,371 - SM_b20480 0.46 -0.8 494,371 - SM_b20480 0.46 -0.3 494,371 - SM_b20480 0.46 +0.4 494,469 + SM_b20480 0.58 +0.6 494,470 - SM_b20480 0.58 -0.6 494,632 - SM_b20480 0.79 -0.1 494,744 + -0.5 494,744 + +0.3 494,745 - +0.8 494,764 - +0.1 495,153 + SM_b20481 0.13 +0.3 495,361 - SM_b20481 0.25 -0.3 495,362 + SM_b20481 0.25 +0.0 495,374 - SM_b20481 0.26 +0.3 495,465 + SM_b20481 0.31 +0.1 495,465 + SM_b20481 0.31 +0.5 495,466 - SM_b20481 0.31 +1.0
Or see this region's nucleotide sequence