Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS37395 and RR42_RS37400 are separated by 4 nucleotides RR42_RS37400 and RR42_RS37405 are separated by 52 nucleotides
RR42_RS37395: RR42_RS37395 - glucokinase, at 3,867,454 to 3,868,491
_RS37395
RR42_RS37400: RR42_RS37400 - 6-phosphogluconolactonase, at 3,868,496 to 3,869,176
_RS37400
RR42_RS37405: RR42_RS37405 - glucose-6-phosphate dehydrogenase, at 3,869,229 to 3,870,677
_RS37405
Position (kb)
3868
3869
3870 Strain fitness (log2 ratio)
-2
-1
0
1 at 3867.588 kb on - strand, within RR42_RS37395 at 3867.588 kb on - strand, within RR42_RS37395 at 3867.609 kb on - strand, within RR42_RS37395 at 3867.609 kb on - strand, within RR42_RS37395 at 3867.609 kb on - strand, within RR42_RS37395 at 3867.701 kb on + strand, within RR42_RS37395 at 3868.000 kb on - strand, within RR42_RS37395 at 3868.349 kb on + strand, within RR42_RS37395 at 3868.349 kb on + strand, within RR42_RS37395 at 3868.350 kb on - strand, within RR42_RS37395 at 3868.350 kb on - strand, within RR42_RS37395 at 3868.393 kb on - strand at 3868.703 kb on - strand, within RR42_RS37400 at 3869.158 kb on + strand at 3869.158 kb on + strand at 3869.159 kb on - strand at 3869.159 kb on - strand at 3869.166 kb on + strand at 3869.166 kb on + strand at 3869.167 kb on - strand at 3869.167 kb on - strand at 3869.206 kb on + strand at 3869.206 kb on + strand at 3869.207 kb on - strand at 3869.207 kb on - strand at 3869.308 kb on + strand at 3869.308 kb on + strand at 3869.342 kb on + strand at 3869.342 kb on + strand at 3869.343 kb on - strand at 3869.343 kb on - strand at 3869.343 kb on - strand at 3869.343 kb on - strand at 3869.343 kb on - strand at 3869.517 kb on - strand, within RR42_RS37405 at 3869.543 kb on - strand, within RR42_RS37405 at 3869.695 kb on + strand, within RR42_RS37405 at 3869.696 kb on - strand, within RR42_RS37405 at 3869.696 kb on - strand, within RR42_RS37405 at 3869.794 kb on + strand at 3869.794 kb on + strand, within RR42_RS37405 at 3870.019 kb on + strand, within RR42_RS37405 at 3870.164 kb on - strand, within RR42_RS37405
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 3,867,588 - RR42_RS37395 0.13 -0.9 3,867,588 - RR42_RS37395 0.13 -0.6 3,867,609 - RR42_RS37395 0.15 +0.3 3,867,609 - RR42_RS37395 0.15 -0.9 3,867,609 - RR42_RS37395 0.15 +0.4 3,867,701 + RR42_RS37395 0.24 -0.4 3,868,000 - RR42_RS37395 0.53 +0.4 3,868,349 + RR42_RS37395 0.86 -0.1 3,868,349 + RR42_RS37395 0.86 +0.9 3,868,350 - RR42_RS37395 0.86 +0.1 3,868,350 - RR42_RS37395 0.86 +0.1 3,868,393 - +0.1 3,868,703 - RR42_RS37400 0.30 -0.7 3,869,158 + -1.5 3,869,158 + +0.3 3,869,159 - +0.2 3,869,159 - -0.2 3,869,166 + -0.9 3,869,166 + -0.1 3,869,167 - +0.3 3,869,167 - -0.6 3,869,206 + +0.0 3,869,206 + +1.7 3,869,207 - +0.2 3,869,207 - +0.5 3,869,308 + +0.7 3,869,308 + -2.3 3,869,342 + -0.3 3,869,342 + +0.7 3,869,343 - -1.5 3,869,343 - -0.7 3,869,343 - -0.6 3,869,343 - -2.0 3,869,343 - -2.3 3,869,517 - RR42_RS37405 0.20 +0.5 3,869,543 - RR42_RS37405 0.22 -0.6 3,869,695 + RR42_RS37405 0.32 -0.5 3,869,696 - RR42_RS37405 0.32 -0.0 3,869,696 - RR42_RS37405 0.32 -0.5 3,869,794 + +0.1 3,869,794 + RR42_RS37405 0.39 -2.2 3,870,019 + RR42_RS37405 0.55 +0.7 3,870,164 - RR42_RS37405 0.65 -1.8
Or see this region's nucleotide sequence