Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35850

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
3,489,237	+		RR42_RS35840	0.83	+2.0
3,489,238	-		RR42_RS35840	0.83	-0.1
3,489,238	-		RR42_RS35840	0.83	+0.0
3,489,404	-				-0.2
3,489,404	-				-0.8
3,489,424	+				-0.2
3,489,424	+				+0.1
3,489,424	+				+1.3
3,489,425	-				-0.3
3,489,459	+				-0.2
3,489,459	+				+1.2
3,489,460	-				-0.1
3,489,481	-				-1.5
3,489,494	-				-0.2
3,489,505	+				+0.8
3,489,506	-				+0.5
3,489,506	-				-0.0
3,489,546	+				-0.2
3,489,606	-				-2.2
3,489,606	-				-1.7
3,489,669	+		RR42_RS35845	0.23	-0.3
3,489,669	+		RR42_RS35845	0.23	-0.5
3,489,798	+		RR42_RS35845	0.50	+0.5
3,489,798	+		RR42_RS35845	0.50	-0.3
3,489,798	+		RR42_RS35845	0.50	+0.7
3,489,799	-		RR42_RS35845	0.50	-0.0
3,489,807	+		RR42_RS35845	0.52	+0.2
3,489,807	+		RR42_RS35845	0.52	-0.1
3,489,807	+		RR42_RS35845	0.52	+0.4
3,489,807	+		RR42_RS35845	0.52	-0.2
3,489,807	+		RR42_RS35845	0.52	-0.2
3,489,807	+		RR42_RS35845	0.52	-0.2
3,489,807	+		RR42_RS35845	0.52	-1.0
3,489,807	+		RR42_RS35845	0.52	-0.3
3,489,808	-		RR42_RS35845	0.52	-0.6
3,489,808	-		RR42_RS35845	0.52	-2.3
3,489,808	-		RR42_RS35845	0.52	-1.8
3,489,808	-		RR42_RS35845	0.52	-0.4
3,489,808	-		RR42_RS35845	0.52	+0.5
3,489,808	-		RR42_RS35845	0.52	+0.4
3,489,808	-		RR42_RS35845	0.52	+0.1
3,489,891	+		RR42_RS35845	0.69	-0.7
3,489,891	+		RR42_RS35845	0.69	+1.0
3,489,892	-		RR42_RS35845	0.70	+0.7
3,489,892	-		RR42_RS35845	0.70	+1.0
3,489,927	+		RR42_RS35845	0.77	+1.0
3,489,967	-		RR42_RS35845	0.85	-0.6
3,489,967	-		RR42_RS35845	0.85	-0.6
3,490,145	+				+0.1
3,490,152	+				+0.4
3,490,159	+				-0.8
3,490,195	-				-1.2
3,490,207	-				-0.5
3,490,207	-				+0.4
3,490,227	-				-0.1
3,490,365	+		RR42_RS35850	0.42	-0.8
3,490,365	+		RR42_RS35850	0.42	-1.0
3,490,366	-		RR42_RS35850	0.42	-0.5
3,490,568	+				-2.3
3,490,568	+				-0.2
3,490,568	+				+0.6
3,490,573	+				+0.2
3,490,573	+				-0.4
3,490,574	-				+0.7
3,490,574	-				+0.1
3,490,574	-				-0.3
3,490,588	+				-0.5
3,490,588	+				+0.6
3,490,588	+				+0.0
3,490,589	-				+0.3
3,490,589	-				+0.5
3,490,589	-				+0.3
3,490,589	-				-0.9
3,490,755	+				+0.3
3,490,755	+				+1.0
3,490,755	+				+0.4
3,490,826	+				-0.2
3,490,826	+				-0.0
3,490,826	+				-0.3
3,490,826	+				-0.4
3,490,827	-				-0.2
3,490,827	-				+0.2
3,490,827	-				-0.3
3,490,827	-				-1.4
3,490,827	-				-0.5
3,490,827	-				-0.2
3,490,829	+				-0.4
3,490,830	-				-0.5
3,490,830	-				-0.7
3,490,830	-				+0.7
3,490,830	-				-0.6
3,490,906	+				+0.2
3,490,906	+				+0.4
3,490,907	-				+0.0
3,490,907	-				-0.3
3,490,907	-				-0.4
3,491,131	-		RR42_RS35855	0.27	-1.0
3,491,131	-		RR42_RS35855	0.27	-0.7
3,491,432	+		RR42_RS35855	0.67	-0.2
3,491,432	+		RR42_RS35855	0.67	+1.6
3,491,433	-		RR42_RS35855	0.68	+0.7
3,491,433	-		RR42_RS35855	0.68	+1.0
3,491,433	-		RR42_RS35855	0.68	-1.2
3,491,433	-		RR42_RS35855	0.68	-0.7
3,491,488	+		RR42_RS35855	0.75	-0.3
3,491,488	+		RR42_RS35855	0.75	-1.2
3,491,489	-		RR42_RS35855	0.75	-0.0
3,491,489	-		RR42_RS35855	0.75	-0.8
3,491,563	+		RR42_RS35855	0.85	+0.3
3,491,564	-		RR42_RS35855	0.85	-0.8