Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS35625 and RR42_RS35630 are separated by 892 nucleotides RR42_RS35630 and RR42_RS35635 are separated by 7 nucleotides RR42_RS35635 and RR42_RS35640 are separated by 13 nucleotides
RR42_RS35625: RR42_RS35625 - RNA polymerase sigma24 factor, at 3,446,210 to 3,446,767
_RS35625
RR42_RS35630: RR42_RS35630 - ArsR family transcriptional regulator, at 3,447,660 to 3,448,313
_RS35630
RR42_RS35635: RR42_RS35635 - hypothetical protein, at 3,448,321 to 3,448,671
_RS35635
RR42_RS35640: RR42_RS35640 - MBL fold metallo-hydrolase, at 3,448,685 to 3,449,440
_RS35640
Position (kb)
3447
3448
3449 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3446.689 kb on - strand, within RR42_RS35625 at 3446.717 kb on + strand at 3446.821 kb on + strand at 3446.821 kb on + strand at 3446.822 kb on - strand at 3446.822 kb on - strand at 3446.822 kb on - strand at 3446.822 kb on - strand at 3446.910 kb on - strand at 3446.929 kb on + strand at 3446.929 kb on + strand at 3446.975 kb on + strand at 3447.037 kb on - strand at 3447.112 kb on - strand at 3447.284 kb on + strand at 3447.284 kb on + strand at 3447.288 kb on + strand at 3447.288 kb on + strand at 3447.288 kb on + strand at 3447.349 kb on + strand at 3447.349 kb on + strand at 3447.349 kb on + strand at 3447.350 kb on - strand at 3447.350 kb on - strand at 3447.408 kb on + strand at 3447.409 kb on - strand at 3447.434 kb on + strand at 3447.436 kb on + strand at 3447.437 kb on - strand at 3447.437 kb on - strand at 3447.437 kb on - strand at 3447.437 kb on - strand at 3447.531 kb on + strand at 3447.532 kb on - strand at 3447.534 kb on + strand at 3447.534 kb on + strand at 3447.535 kb on - strand at 3447.535 kb on - strand at 3447.606 kb on + strand at 3447.606 kb on + strand at 3447.607 kb on - strand at 3447.607 kb on - strand at 3447.607 kb on - strand at 3447.671 kb on - strand at 3447.684 kb on + strand at 3447.684 kb on + strand at 3447.685 kb on - strand at 3447.685 kb on - strand at 3447.685 kb on - strand at 3447.694 kb on + strand at 3447.713 kb on + strand at 3447.713 kb on + strand at 3447.850 kb on + strand, within RR42_RS35630 at 3447.851 kb on - strand, within RR42_RS35630 at 3447.851 kb on - strand, within RR42_RS35630 at 3447.876 kb on + strand, within RR42_RS35630 at 3447.876 kb on + strand, within RR42_RS35630 at 3447.877 kb on - strand, within RR42_RS35630 at 3447.877 kb on - strand, within RR42_RS35630 at 3447.877 kb on - strand, within RR42_RS35630 at 3447.877 kb on - strand, within RR42_RS35630 at 3447.877 kb on - strand, within RR42_RS35630 at 3447.917 kb on - strand, within RR42_RS35630 at 3448.054 kb on + strand, within RR42_RS35630 at 3448.055 kb on - strand, within RR42_RS35630 at 3448.055 kb on - strand, within RR42_RS35630 at 3448.057 kb on + strand, within RR42_RS35630 at 3448.136 kb on + strand, within RR42_RS35630 at 3448.136 kb on + strand, within RR42_RS35630 at 3448.136 kb on + strand, within RR42_RS35630 at 3448.183 kb on - strand, within RR42_RS35630 at 3448.183 kb on - strand, within RR42_RS35630 at 3448.311 kb on + strand at 3448.311 kb on + strand at 3448.311 kb on + strand at 3448.311 kb on + strand at 3448.311 kb on + strand at 3448.312 kb on - strand at 3448.312 kb on - strand at 3448.354 kb on + strand at 3448.368 kb on + strand, within RR42_RS35635 at 3448.368 kb on + strand, within RR42_RS35635 at 3448.368 kb on + strand, within RR42_RS35635 at 3448.369 kb on - strand, within RR42_RS35635 at 3448.372 kb on + strand, within RR42_RS35635 at 3448.372 kb on + strand, within RR42_RS35635 at 3448.373 kb on - strand, within RR42_RS35635 at 3448.400 kb on + strand, within RR42_RS35635 at 3448.400 kb on + strand, within RR42_RS35635 at 3448.492 kb on + strand, within RR42_RS35635 at 3448.492 kb on + strand, within RR42_RS35635 at 3448.493 kb on - strand, within RR42_RS35635 at 3448.493 kb on - strand, within RR42_RS35635 at 3448.493 kb on - strand, within RR42_RS35635 at 3448.493 kb on - strand, within RR42_RS35635 at 3448.594 kb on - strand, within RR42_RS35635 at 3448.594 kb on - strand, within RR42_RS35635 at 3448.594 kb on - strand, within RR42_RS35635 at 3448.594 kb on - strand, within RR42_RS35635 at 3448.868 kb on + strand, within RR42_RS35640 at 3448.868 kb on + strand, within RR42_RS35640 at 3448.910 kb on + strand, within RR42_RS35640 at 3448.911 kb on - strand, within RR42_RS35640 at 3448.913 kb on + strand, within RR42_RS35640 at 3448.914 kb on - strand, within RR42_RS35640 at 3449.026 kb on + strand, within RR42_RS35640 at 3449.027 kb on - strand, within RR42_RS35640 at 3449.027 kb on - strand, within RR42_RS35640 at 3449.027 kb on - strand, within RR42_RS35640 at 3449.052 kb on + strand, within RR42_RS35640 at 3449.052 kb on + strand, within RR42_RS35640 at 3449.053 kb on - strand, within RR42_RS35640 at 3449.053 kb on - strand, within RR42_RS35640 at 3449.053 kb on - strand, within RR42_RS35640 at 3449.172 kb on - strand, within RR42_RS35640
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 3,446,689 - RR42_RS35625 0.86 +0.1 3,446,717 + -0.8 3,446,821 + -0.5 3,446,821 + +0.8 3,446,822 - +0.3 3,446,822 - +1.1 3,446,822 - +0.3 3,446,822 - -0.2 3,446,910 - -1.1 3,446,929 + -0.5 3,446,929 + +0.0 3,446,975 + -0.7 3,447,037 - +1.0 3,447,112 - -0.4 3,447,284 + -0.6 3,447,284 + -0.0 3,447,288 + -0.7 3,447,288 + -0.9 3,447,288 + +0.1 3,447,349 + +0.5 3,447,349 + -0.3 3,447,349 + -1.5 3,447,350 - -0.2 3,447,350 - -0.4 3,447,408 + +0.6 3,447,409 - +0.8 3,447,434 + -0.3 3,447,436 + -0.2 3,447,437 - -0.3 3,447,437 - -0.9 3,447,437 - -0.7 3,447,437 - +1.2 3,447,531 + +0.3 3,447,532 - +0.8 3,447,534 + +0.4 3,447,534 + +1.9 3,447,535 - +0.1 3,447,535 - +0.5 3,447,606 + +0.1 3,447,606 + +0.1 3,447,607 - +0.9 3,447,607 - +0.6 3,447,607 - +1.1 3,447,671 - -0.1 3,447,684 + -0.1 3,447,684 + +0.1 3,447,685 - -0.2 3,447,685 - -0.3 3,447,685 - -0.3 3,447,694 + +0.0 3,447,713 + -0.2 3,447,713 + +0.2 3,447,850 + RR42_RS35630 0.29 +1.0 3,447,851 - RR42_RS35630 0.29 +0.3 3,447,851 - RR42_RS35630 0.29 +0.0 3,447,876 + RR42_RS35630 0.33 +1.0 3,447,876 + RR42_RS35630 0.33 +0.8 3,447,877 - RR42_RS35630 0.33 +1.2 3,447,877 - RR42_RS35630 0.33 -0.5 3,447,877 - RR42_RS35630 0.33 +0.0 3,447,877 - RR42_RS35630 0.33 +1.0 3,447,877 - RR42_RS35630 0.33 +1.3 3,447,917 - RR42_RS35630 0.39 -0.1 3,448,054 + RR42_RS35630 0.60 +0.9 3,448,055 - RR42_RS35630 0.60 +0.1 3,448,055 - RR42_RS35630 0.60 +0.8 3,448,057 + RR42_RS35630 0.61 +1.0 3,448,136 + RR42_RS35630 0.73 +1.2 3,448,136 + RR42_RS35630 0.73 +0.6 3,448,136 + RR42_RS35630 0.73 +1.4 3,448,183 - RR42_RS35630 0.80 +0.5 3,448,183 - RR42_RS35630 0.80 +0.3 3,448,311 + +0.9 3,448,311 + +0.5 3,448,311 + +0.3 3,448,311 + -0.2 3,448,311 + +1.2 3,448,312 - +1.6 3,448,312 - -1.0 3,448,354 + -0.5 3,448,368 + RR42_RS35635 0.13 +0.7 3,448,368 + RR42_RS35635 0.13 +1.0 3,448,368 + RR42_RS35635 0.13 +0.5 3,448,369 - RR42_RS35635 0.14 -0.3 3,448,372 + RR42_RS35635 0.15 +0.5 3,448,372 + RR42_RS35635 0.15 +1.4 3,448,373 - RR42_RS35635 0.15 +0.0 3,448,400 + RR42_RS35635 0.23 +1.0 3,448,400 + RR42_RS35635 0.23 +0.7 3,448,492 + RR42_RS35635 0.49 +0.1 3,448,492 + RR42_RS35635 0.49 +1.3 3,448,493 - RR42_RS35635 0.49 -0.2 3,448,493 - RR42_RS35635 0.49 +0.2 3,448,493 - RR42_RS35635 0.49 +0.1 3,448,493 - RR42_RS35635 0.49 -1.1 3,448,594 - RR42_RS35635 0.78 -0.5 3,448,594 - RR42_RS35635 0.78 -0.1 3,448,594 - RR42_RS35635 0.78 +0.5 3,448,594 - RR42_RS35635 0.78 -2.4 3,448,868 + RR42_RS35640 0.24 +0.3 3,448,868 + RR42_RS35640 0.24 +0.5 3,448,910 + RR42_RS35640 0.30 -0.3 3,448,911 - RR42_RS35640 0.30 -0.4 3,448,913 + RR42_RS35640 0.30 -0.4 3,448,914 - RR42_RS35640 0.30 -0.3 3,449,026 + RR42_RS35640 0.45 +0.0 3,449,027 - RR42_RS35640 0.45 +0.3 3,449,027 - RR42_RS35640 0.45 -0.6 3,449,027 - RR42_RS35640 0.45 -1.1 3,449,052 + RR42_RS35640 0.49 +0.0 3,449,052 + RR42_RS35640 0.49 -0.2 3,449,053 - RR42_RS35640 0.49 +0.4 3,449,053 - RR42_RS35640 0.49 +0.2 3,449,053 - RR42_RS35640 0.49 -0.8 3,449,172 - RR42_RS35640 0.64 -1.5
Or see this region's nucleotide sequence