Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35630

Experiment: R2A with A22 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS35625 and RR42_RS35630 are separated by 892 nucleotidesRR42_RS35630 and RR42_RS35635 are separated by 7 nucleotidesRR42_RS35635 and RR42_RS35640 are separated by 13 nucleotides RR42_RS35625: RR42_RS35625 - RNA polymerase sigma24 factor, at 3,446,210 to 3,446,767 _RS35625 RR42_RS35630: RR42_RS35630 - ArsR family transcriptional regulator, at 3,447,660 to 3,448,313 _RS35630 RR42_RS35635: RR42_RS35635 - hypothetical protein, at 3,448,321 to 3,448,671 _RS35635 RR42_RS35640: RR42_RS35640 - MBL fold metallo-hydrolase, at 3,448,685 to 3,449,440 _RS35640 Position (kb) 3447 3448 3449Strain fitness (log2 ratio) -2 -1 0 1 2at 3446.689 kb on - strand, within RR42_RS35625at 3446.717 kb on + strandat 3446.821 kb on + strandat 3446.821 kb on + strandat 3446.822 kb on - strandat 3446.822 kb on - strandat 3446.822 kb on - strandat 3446.822 kb on - strandat 3446.910 kb on - strandat 3446.929 kb on + strandat 3446.929 kb on + strandat 3446.975 kb on + strandat 3447.037 kb on - strandat 3447.112 kb on - strandat 3447.284 kb on + strandat 3447.284 kb on + strandat 3447.288 kb on + strandat 3447.288 kb on + strandat 3447.288 kb on + strandat 3447.349 kb on + strandat 3447.349 kb on + strandat 3447.349 kb on + strandat 3447.350 kb on - strandat 3447.350 kb on - strandat 3447.408 kb on + strandat 3447.409 kb on - strandat 3447.434 kb on + strandat 3447.436 kb on + strandat 3447.437 kb on - strandat 3447.437 kb on - strandat 3447.437 kb on - strandat 3447.437 kb on - strandat 3447.531 kb on + strandat 3447.532 kb on - strandat 3447.534 kb on + strandat 3447.534 kb on + strandat 3447.535 kb on - strandat 3447.535 kb on - strandat 3447.606 kb on + strandat 3447.606 kb on + strandat 3447.607 kb on - strandat 3447.607 kb on - strandat 3447.607 kb on - strandat 3447.671 kb on - strandat 3447.684 kb on + strandat 3447.684 kb on + strandat 3447.685 kb on - strandat 3447.685 kb on - strandat 3447.685 kb on - strandat 3447.694 kb on + strandat 3447.713 kb on + strandat 3447.713 kb on + strandat 3447.850 kb on + strand, within RR42_RS35630at 3447.851 kb on - strand, within RR42_RS35630at 3447.851 kb on - strand, within RR42_RS35630at 3447.876 kb on + strand, within RR42_RS35630at 3447.876 kb on + strand, within RR42_RS35630at 3447.877 kb on - strand, within RR42_RS35630at 3447.877 kb on - strand, within RR42_RS35630at 3447.877 kb on - strand, within RR42_RS35630at 3447.877 kb on - strand, within RR42_RS35630at 3447.877 kb on - strand, within RR42_RS35630at 3447.917 kb on - strand, within RR42_RS35630at 3448.054 kb on + strand, within RR42_RS35630at 3448.055 kb on - strand, within RR42_RS35630at 3448.055 kb on - strand, within RR42_RS35630at 3448.057 kb on + strand, within RR42_RS35630at 3448.136 kb on + strand, within RR42_RS35630at 3448.136 kb on + strand, within RR42_RS35630at 3448.136 kb on + strand, within RR42_RS35630at 3448.183 kb on - strand, within RR42_RS35630at 3448.183 kb on - strand, within RR42_RS35630at 3448.311 kb on + strandat 3448.311 kb on + strandat 3448.311 kb on + strandat 3448.311 kb on + strandat 3448.311 kb on + strandat 3448.312 kb on - strandat 3448.312 kb on - strandat 3448.354 kb on + strandat 3448.368 kb on + strand, within RR42_RS35635at 3448.368 kb on + strand, within RR42_RS35635at 3448.368 kb on + strand, within RR42_RS35635at 3448.369 kb on - strand, within RR42_RS35635at 3448.372 kb on + strand, within RR42_RS35635at 3448.372 kb on + strand, within RR42_RS35635at 3448.373 kb on - strand, within RR42_RS35635at 3448.400 kb on + strand, within RR42_RS35635at 3448.400 kb on + strand, within RR42_RS35635at 3448.492 kb on + strand, within RR42_RS35635at 3448.492 kb on + strand, within RR42_RS35635at 3448.493 kb on - strand, within RR42_RS35635at 3448.493 kb on - strand, within RR42_RS35635at 3448.493 kb on - strand, within RR42_RS35635at 3448.493 kb on - strand, within RR42_RS35635at 3448.594 kb on - strand, within RR42_RS35635at 3448.594 kb on - strand, within RR42_RS35635at 3448.594 kb on - strand, within RR42_RS35635at 3448.594 kb on - strand, within RR42_RS35635at 3448.868 kb on + strand, within RR42_RS35640at 3448.868 kb on + strand, within RR42_RS35640at 3448.910 kb on + strand, within RR42_RS35640at 3448.911 kb on - strand, within RR42_RS35640at 3448.913 kb on + strand, within RR42_RS35640at 3448.914 kb on - strand, within RR42_RS35640at 3449.026 kb on + strand, within RR42_RS35640at 3449.027 kb on - strand, within RR42_RS35640at 3449.027 kb on - strand, within RR42_RS35640at 3449.027 kb on - strand, within RR42_RS35640at 3449.052 kb on + strand, within RR42_RS35640at 3449.052 kb on + strand, within RR42_RS35640at 3449.053 kb on - strand, within RR42_RS35640at 3449.053 kb on - strand, within RR42_RS35640at 3449.053 kb on - strand, within RR42_RS35640at 3449.172 kb on - strand, within RR42_RS35640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
remove
3,446,689 - RR42_RS35625 0.86 +0.1
3,446,717 + -0.8
3,446,821 + -0.5
3,446,821 + +0.8
3,446,822 - +0.3
3,446,822 - +1.1
3,446,822 - +0.3
3,446,822 - -0.2
3,446,910 - -1.1
3,446,929 + -0.5
3,446,929 + +0.0
3,446,975 + -0.7
3,447,037 - +1.0
3,447,112 - -0.4
3,447,284 + -0.6
3,447,284 + -0.0
3,447,288 + -0.7
3,447,288 + -0.9
3,447,288 + +0.1
3,447,349 + +0.5
3,447,349 + -0.3
3,447,349 + -1.5
3,447,350 - -0.2
3,447,350 - -0.4
3,447,408 + +0.6
3,447,409 - +0.8
3,447,434 + -0.3
3,447,436 + -0.2
3,447,437 - -0.3
3,447,437 - -0.9
3,447,437 - -0.7
3,447,437 - +1.2
3,447,531 + +0.3
3,447,532 - +0.8
3,447,534 + +0.4
3,447,534 + +1.9
3,447,535 - +0.1
3,447,535 - +0.5
3,447,606 + +0.1
3,447,606 + +0.1
3,447,607 - +0.9
3,447,607 - +0.6
3,447,607 - +1.1
3,447,671 - -0.1
3,447,684 + -0.1
3,447,684 + +0.1
3,447,685 - -0.2
3,447,685 - -0.3
3,447,685 - -0.3
3,447,694 + +0.0
3,447,713 + -0.2
3,447,713 + +0.2
3,447,850 + RR42_RS35630 0.29 +1.0
3,447,851 - RR42_RS35630 0.29 +0.3
3,447,851 - RR42_RS35630 0.29 +0.0
3,447,876 + RR42_RS35630 0.33 +1.0
3,447,876 + RR42_RS35630 0.33 +0.8
3,447,877 - RR42_RS35630 0.33 +1.2
3,447,877 - RR42_RS35630 0.33 -0.5
3,447,877 - RR42_RS35630 0.33 +0.0
3,447,877 - RR42_RS35630 0.33 +1.0
3,447,877 - RR42_RS35630 0.33 +1.3
3,447,917 - RR42_RS35630 0.39 -0.1
3,448,054 + RR42_RS35630 0.60 +0.9
3,448,055 - RR42_RS35630 0.60 +0.1
3,448,055 - RR42_RS35630 0.60 +0.8
3,448,057 + RR42_RS35630 0.61 +1.0
3,448,136 + RR42_RS35630 0.73 +1.2
3,448,136 + RR42_RS35630 0.73 +0.6
3,448,136 + RR42_RS35630 0.73 +1.4
3,448,183 - RR42_RS35630 0.80 +0.5
3,448,183 - RR42_RS35630 0.80 +0.3
3,448,311 + +0.9
3,448,311 + +0.5
3,448,311 + +0.3
3,448,311 + -0.2
3,448,311 + +1.2
3,448,312 - +1.6
3,448,312 - -1.0
3,448,354 + -0.5
3,448,368 + RR42_RS35635 0.13 +0.7
3,448,368 + RR42_RS35635 0.13 +1.0
3,448,368 + RR42_RS35635 0.13 +0.5
3,448,369 - RR42_RS35635 0.14 -0.3
3,448,372 + RR42_RS35635 0.15 +0.5
3,448,372 + RR42_RS35635 0.15 +1.4
3,448,373 - RR42_RS35635 0.15 +0.0
3,448,400 + RR42_RS35635 0.23 +1.0
3,448,400 + RR42_RS35635 0.23 +0.7
3,448,492 + RR42_RS35635 0.49 +0.1
3,448,492 + RR42_RS35635 0.49 +1.3
3,448,493 - RR42_RS35635 0.49 -0.2
3,448,493 - RR42_RS35635 0.49 +0.2
3,448,493 - RR42_RS35635 0.49 +0.1
3,448,493 - RR42_RS35635 0.49 -1.1
3,448,594 - RR42_RS35635 0.78 -0.5
3,448,594 - RR42_RS35635 0.78 -0.1
3,448,594 - RR42_RS35635 0.78 +0.5
3,448,594 - RR42_RS35635 0.78 -2.4
3,448,868 + RR42_RS35640 0.24 +0.3
3,448,868 + RR42_RS35640 0.24 +0.5
3,448,910 + RR42_RS35640 0.30 -0.3
3,448,911 - RR42_RS35640 0.30 -0.4
3,448,913 + RR42_RS35640 0.30 -0.4
3,448,914 - RR42_RS35640 0.30 -0.3
3,449,026 + RR42_RS35640 0.45 +0.0
3,449,027 - RR42_RS35640 0.45 +0.3
3,449,027 - RR42_RS35640 0.45 -0.6
3,449,027 - RR42_RS35640 0.45 -1.1
3,449,052 + RR42_RS35640 0.49 +0.0
3,449,052 + RR42_RS35640 0.49 -0.2
3,449,053 - RR42_RS35640 0.49 +0.4
3,449,053 - RR42_RS35640 0.49 +0.2
3,449,053 - RR42_RS35640 0.49 -0.8
3,449,172 - RR42_RS35640 0.64 -1.5

Or see this region's nucleotide sequence