Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35560

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
3,430,323	+		RR42_RS35550	0.80	-1.2
3,430,324	-		RR42_RS35550	0.80	-0.2
3,430,376	+		RR42_RS35550	0.88	-0.6
3,430,376	+		RR42_RS35550	0.88	-0.6
3,430,377	-		RR42_RS35550	0.88	-0.1
3,430,501	+				-0.3
3,430,501	+				-0.4
3,430,501	+				-0.3
3,430,501	+				+0.9
3,430,502	-				-0.8
3,430,502	-				-0.5
3,430,502	-				-1.1
3,430,502	-				+3.0
3,430,502	-				-0.9
3,430,561	+				+1.0
3,430,562	-				-0.4
3,430,562	-				+0.0
3,430,562	-				-1.0
3,430,562	-				+1.0
3,430,562	-				-0.1
3,430,562	-				+0.2
3,430,597	+				-0.8
3,430,756	+		RR42_RS35555	0.19	-0.1
3,430,756	+		RR42_RS35555	0.19	+0.0
3,430,756	+		RR42_RS35555	0.19	+0.4
3,430,757	-		RR42_RS35555	0.19	-1.6
3,430,757	-		RR42_RS35555	0.19	-0.7
3,430,757	-		RR42_RS35555	0.19	-3.3
3,430,820	-		RR42_RS35555	0.43	-0.3
3,430,844	-		RR42_RS35555	0.52	-1.3
3,430,847	+		RR42_RS35555	0.53	-0.8
3,430,847	+		RR42_RS35555	0.53	-0.5
3,430,847	+				+0.0
3,430,847	+		RR42_RS35555	0.53	-0.0
3,430,847	+		RR42_RS35555	0.53	-0.5
3,430,848	-		RR42_RS35555	0.54	+0.5
3,430,848	-		RR42_RS35555	0.54	-0.4
3,430,848	-		RR42_RS35555	0.54	-1.3
3,430,873	+		RR42_RS35555	0.63	+0.1
3,430,922	+		RR42_RS35555	0.82	-1.1
3,430,930	+		RR42_RS35555	0.85	+2.0
3,430,930	+		RR42_RS35555	0.85	+0.8
3,430,999	+				-0.3
3,430,999	+				-0.3
3,431,071	+				-0.5
3,431,072	-				+0.6
3,431,073	+				+0.2
3,431,073	+				-0.0
3,431,236	+				+0.5
3,431,236	+				+0.0
3,431,249	-				+1.0
3,431,249	-				+0.7
3,431,249	-				-1.8
3,431,250	+				-0.4
3,431,282	+		RR42_RS35560	0.21	-0.4
3,431,283	-		RR42_RS35560	0.22	-0.8
3,431,283	-		RR42_RS35560	0.22	-0.7
3,431,312	+		RR42_RS35560	0.35	-0.7
3,431,312	+		RR42_RS35560	0.35	-1.2
3,431,312	+		RR42_RS35560	0.35	-1.0
3,431,313	-		RR42_RS35560	0.36	+0.2
3,431,313	-		RR42_RS35560	0.36	-0.5
3,431,342	+		RR42_RS35560	0.49	+0.1
3,431,342	+		RR42_RS35560	0.49	-1.6
3,431,342	+		RR42_RS35560	0.49	+0.5
3,431,342	+		RR42_RS35560	0.49	+3.0
3,431,342	+		RR42_RS35560	0.49	-0.2
3,431,342	+		RR42_RS35560	0.49	+0.1
3,431,343	-		RR42_RS35560	0.50	-0.0
3,431,343	-		RR42_RS35560	0.50	-0.3
3,431,343	-		RR42_RS35560	0.50	-0.3
3,431,359	+		RR42_RS35560	0.57	+0.1
3,431,473	-				+2.0
3,431,473	-				-0.2
3,431,473	-				+0.3
3,431,473	-				+0.2
3,431,475	+				-0.7
3,431,475	+				-0.3
3,431,475	+				-3.1
3,431,476	-				+0.9
3,431,476	-				+0.7
3,431,480	+				-0.2
3,431,481	-				-0.2
3,431,488	+				-0.0
3,431,494	+				-0.3
3,431,544	+				-0.5
3,431,580	+				+1.2
3,431,620	-				+0.7
3,431,620	-				-0.5
3,431,620	-				+0.6
3,431,666	+				-0.4
3,431,667	-				-0.3
3,431,695	-				-0.1
3,431,727	+				+0.0
3,431,727	+				-0.2
3,431,731	+				+0.6
3,431,732	-				+0.6
3,431,808	-				-1.0
3,431,858	+		RR42_RS35565	0.15	-0.3
3,431,859	-		RR42_RS35565	0.15	-0.2
3,431,868	+		RR42_RS35565	0.16	+1.0
3,432,015	+		RR42_RS35565	0.29	+0.5
3,432,015	+		RR42_RS35565	0.29	+0.2
3,432,016	-		RR42_RS35565	0.29	+0.8
3,432,016	-		RR42_RS35565	0.29	+0.9
3,432,085	-		RR42_RS35565	0.36	-0.2
3,432,085	-		RR42_RS35565	0.36	-0.0
3,432,188	+		RR42_RS35565	0.46	+0.3
3,432,189	-		RR42_RS35565	0.46	-0.3
3,432,189	-		RR42_RS35565	0.46	-1.3
3,432,189	-		RR42_RS35565	0.46	+0.3
3,432,189	-		RR42_RS35565	0.46	+0.1
3,432,203	+		RR42_RS35565	0.47	+0.5
3,432,204	-		RR42_RS35565	0.47	-0.6
3,432,240	-		RR42_RS35565	0.50	+0.0
3,432,351	-		RR42_RS35565	0.61	+2.2
3,432,356	+		RR42_RS35565	0.61	+1.3
3,432,364	-		RR42_RS35565	0.62	+0.3
3,432,364	-		RR42_RS35565	0.62	-1.8