Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34680
Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,220,075 | + | -1.4 | |||
3,220,075 | + | -0.0 | |||
3,220,075 | + | +1.0 | |||
3,220,075 | + | -0.3 | |||
3,220,075 | + | -1.8 | |||
3,220,076 | - | +1.5 | |||
3,220,076 | - | -0.6 | |||
3,220,228 | - | RR42_RS34675 | 0.15 | -0.9 | |
3,220,786 | - | RR42_RS34675 | 0.78 | +0.8 | |
3,220,954 | + | +0.5 | |||
3,220,955 | - | -0.0 | |||
3,220,972 | + | -0.4 | |||
3,221,233 | - | RR42_RS34680 | 0.27 | +0.7 | |
3,221,546 | - | RR42_RS34680 | 0.71 | +1.8 | |
3,221,826 | + | -0.5 | |||
3,221,897 | - | -1.6 | |||
3,222,043 | + | RR42_RS34685 | 0.25 | -0.9 | |
3,222,085 | + | RR42_RS34685 | 0.30 | -0.5 | |
3,222,146 | - | RR42_RS34685 | 0.37 | -0.3 | |
3,222,248 | - | RR42_RS34685 | 0.48 | +0.3 | |
3,222,386 | - | RR42_RS34685 | 0.64 | +0.8 | |
3,222,406 | + | RR42_RS34685 | 0.67 | -0.5 | |
3,222,662 | + | -2.8 | |||
3,222,663 | - | +1.0 |
Or see this region's nucleotide sequence