Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34525 and RR42_RS34530 overlap by 4 nucleotides RR42_RS34530 and RR42_RS34535 are separated by 0 nucleotides
RR42_RS34525: RR42_RS34525 - type VI secretion protein VasK, at 3,177,558 to 3,181,133
_RS34525
RR42_RS34530: RR42_RS34530 - hypothetical protein, at 3,181,130 to 3,182,371
_RS34530
RR42_RS34535: RR42_RS34535 - membrane protein, at 3,182,372 to 3,182,629
_RS34535
Position (kb)
3181
3182
3183 Strain fitness (log2 ratio)
-2
-1
0
1 at 3180.810 kb on + strand at 3180.889 kb on + strand at 3180.890 kb on - strand at 3180.890 kb on - strand at 3180.950 kb on - strand at 3181.083 kb on + strand at 3181.091 kb on + strand at 3181.099 kb on + strand at 3181.099 kb on + strand at 3181.100 kb on - strand at 3181.100 kb on - strand at 3181.100 kb on - strand at 3181.100 kb on - strand at 3181.108 kb on - strand at 3181.124 kb on - strand at 3181.583 kb on + strand, within RR42_RS34530 at 3181.584 kb on - strand, within RR42_RS34530 at 3181.584 kb on - strand, within RR42_RS34530 at 3181.694 kb on + strand, within RR42_RS34530 at 3181.694 kb on + strand, within RR42_RS34530 at 3181.695 kb on - strand, within RR42_RS34530 at 3181.695 kb on - strand, within RR42_RS34530 at 3181.695 kb on - strand, within RR42_RS34530 at 3181.757 kb on + strand, within RR42_RS34530 at 3181.758 kb on - strand, within RR42_RS34530 at 3181.763 kb on + strand, within RR42_RS34530 at 3181.764 kb on - strand, within RR42_RS34530 at 3181.764 kb on - strand, within RR42_RS34530 at 3181.847 kb on - strand, within RR42_RS34530 at 3182.247 kb on + strand at 3182.248 kb on - strand at 3182.248 kb on - strand at 3182.373 kb on + strand at 3182.374 kb on - strand at 3182.410 kb on + strand, within RR42_RS34535 at 3182.410 kb on + strand, within RR42_RS34535 at 3182.599 kb on + strand, within RR42_RS34535 at 3182.726 kb on - strand at 3182.800 kb on + strand at 3182.825 kb on + strand at 3182.922 kb on - strand at 3182.946 kb on - strand at 3183.068 kb on - strand at 3183.072 kb on - strand at 3183.081 kb on - strand at 3183.081 kb on - strand at 3183.117 kb on + strand at 3183.268 kb on - strand at 3183.269 kb on + strand at 3183.269 kb on + strand at 3183.286 kb on + strand at 3183.331 kb on + strand at 3183.332 kb on - strand at 3183.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 3,180,810 + -0.1 3,180,889 + +0.2 3,180,890 - -0.1 3,180,890 - -0.3 3,180,950 - -2.2 3,181,083 + +0.4 3,181,091 + +0.1 3,181,099 + -0.8 3,181,099 + -0.1 3,181,100 - -1.7 3,181,100 - +0.8 3,181,100 - -0.2 3,181,100 - -1.4 3,181,108 - -0.3 3,181,124 - -0.1 3,181,583 + RR42_RS34530 0.36 +0.4 3,181,584 - RR42_RS34530 0.37 -1.8 3,181,584 - RR42_RS34530 0.37 -2.6 3,181,694 + RR42_RS34530 0.45 -1.8 3,181,694 + RR42_RS34530 0.45 +1.2 3,181,695 - RR42_RS34530 0.45 +0.7 3,181,695 - RR42_RS34530 0.45 +0.8 3,181,695 - RR42_RS34530 0.45 +1.3 3,181,757 + RR42_RS34530 0.50 +0.3 3,181,758 - RR42_RS34530 0.51 +0.4 3,181,763 + RR42_RS34530 0.51 -0.0 3,181,764 - RR42_RS34530 0.51 +0.8 3,181,764 - RR42_RS34530 0.51 +0.8 3,181,847 - RR42_RS34530 0.58 -0.2 3,182,247 + -0.3 3,182,248 - -0.0 3,182,248 - -1.7 3,182,373 + -1.6 3,182,374 - -1.3 3,182,410 + RR42_RS34535 0.15 -0.0 3,182,410 + RR42_RS34535 0.15 +0.4 3,182,599 + RR42_RS34535 0.88 -1.1 3,182,726 - +0.3 3,182,800 + +0.1 3,182,825 + -0.9 3,182,922 - -0.7 3,182,946 - +0.1 3,183,068 - +0.4 3,183,072 - -0.0 3,183,081 - +0.3 3,183,081 - +0.6 3,183,117 + -1.4 3,183,268 - +1.2 3,183,269 + -0.7 3,183,269 + +1.6 3,183,286 + -1.5 3,183,331 + -0.3 3,183,332 - -1.1 3,183,360 + +1.0
Or see this region's nucleotide sequence