Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33250

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
2,873,291	-		RR42_RS33245	0.54	-2.1
2,873,320	+		RR42_RS33245	0.56	-0.2
2,873,324	+		RR42_RS33245	0.56	-1.7
2,873,325	-		RR42_RS33245	0.56	+0.2
2,873,325	-		RR42_RS33245	0.56	-0.3
2,873,325	-		RR42_RS33245	0.56	+0.3
2,873,366	+		RR42_RS33245	0.59	-1.0
2,873,367	-		RR42_RS33245	0.59	-1.1
2,873,367	-		RR42_RS33245	0.59	+0.1
2,873,385	-		RR42_RS33245	0.60	+0.0
2,873,471	+		RR42_RS33245	0.66	-0.1
2,873,587	+		RR42_RS33245	0.75	+0.0
2,873,588	-		RR42_RS33245	0.75	+0.2
2,873,673	+		RR42_RS33245	0.81	-0.0
2,873,918	-				+0.1
2,874,059	-				-1.0
2,874,223	-				+0.1
2,874,299	-				-0.4
2,874,304	+				-1.1
2,874,308	-				+0.4
2,874,308	-				-0.8
2,874,340	+				-1.1
2,874,465	-				-1.4
2,874,522	+		RR42_RS33250	0.12	-0.7
2,874,522	+		RR42_RS33250	0.12	-0.3
2,874,546	+		RR42_RS33250	0.13	-1.7
2,874,582	+		RR42_RS33250	0.14	-1.5
2,874,660	+		RR42_RS33250	0.18	-1.3
2,874,668	+		RR42_RS33250	0.18	+0.1
2,874,705	+		RR42_RS33250	0.20	-1.5
2,874,879	-		RR42_RS33250	0.28	-1.6
2,874,881	+		RR42_RS33250	0.28	-2.3
2,874,881	+		RR42_RS33250	0.28	+0.6
2,874,926	+		RR42_RS33250	0.30	-0.7
2,875,102	+		RR42_RS33250	0.38	-0.7
2,875,102	+		RR42_RS33250	0.38	-0.7
2,875,294	+		RR42_RS33250	0.46	-1.1
2,875,397	+		RR42_RS33250	0.51	-2.7
2,875,428	+		RR42_RS33250	0.52	+0.9
2,875,457	+		RR42_RS33250	0.53	-0.4
2,875,693	+		RR42_RS33250	0.64	+2.9
2,875,959	+		RR42_RS33250	0.76	-0.7
2,876,080	+		RR42_RS33250	0.81	-0.7
2,876,177	+		RR42_RS33250	0.85	-2.0
2,876,177	+		RR42_RS33250	0.85	-0.4
2,876,178	-		RR42_RS33250	0.85	-1.2
2,876,179	+		RR42_RS33250	0.85	-1.0
2,876,179	+				+2.4
2,876,306	+				+0.9
2,876,306	+				-0.2
2,876,368	+				-0.2
2,876,384	+				-0.4
2,876,430	+				+0.5
2,876,443	+				+0.5
2,876,517	+				-1.1
2,876,699	+		RR42_RS33255	0.38	-0.4
2,876,700	-		RR42_RS33255	0.39	-2.1
2,876,858	+		RR42_RS33255	0.75	-1.5
2,877,062	+				-1.2
2,877,176	+		RR42_RS33260	0.19	-0.4
2,877,176	+		RR42_RS33260	0.19	+1.5
2,877,176	+		RR42_RS33260	0.19	+0.7
2,877,401	-		RR42_RS33260	0.38	-0.1
2,877,403	+		RR42_RS33260	0.38	-1.2
2,877,403	+		RR42_RS33260	0.38	-0.2
2,877,407	+		RR42_RS33260	0.39	+4.4
2,877,414	+		RR42_RS33260	0.39	-1.8