Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28690 and RR42_RS28695 are separated by 202 nucleotides RR42_RS28695 and RR42_RS28700 are separated by 6 nucleotides RR42_RS28700 and RR42_RS28705 are separated by 124 nucleotides RR42_RS28705 and RR42_RS28710 are separated by 127 nucleotides
RR42_RS28690: RR42_RS28690 - ABC transporter substrate-binding protein, at 1,790,367 to 1,791,353
_RS28690
RR42_RS28695: RR42_RS28695 - hypothetical protein, at 1,791,556 to 1,791,747
_RS28695
RR42_RS28700: RR42_RS28700 - mechanosensitive ion channel protein MscS, at 1,791,754 to 1,792,116
_RS28700
RR42_RS28705: RR42_RS28705 - hypothetical protein, at 1,792,241 to 1,792,510
_RS28705
RR42_RS28710: RR42_RS28710 - ADP/ATP translocating protein, at 1,792,638 to 1,794,005
_RS28710
Position (kb) 1792
1793 Strain fitness (log2 ratio) -1
0
1
2 at 1791.262 kb on + strand at 1791.263 kb on - strand at 1791.446 kb on - strand at 1791.494 kb on + strand at 1791.498 kb on + strand at 1791.592 kb on - strand, within RR42_RS28695 at 1791.601 kb on + strand, within RR42_RS28695 at 1791.745 kb on + strand at 1791.758 kb on + strand at 1791.768 kb on - strand at 1791.777 kb on - strand at 1791.777 kb on - strand at 1791.800 kb on + strand, within RR42_RS28700 at 1791.800 kb on + strand, within RR42_RS28700 at 1791.801 kb on - strand, within RR42_RS28700 at 1791.801 kb on - strand, within RR42_RS28700 at 1791.803 kb on + strand, within RR42_RS28700 at 1791.803 kb on + strand, within RR42_RS28700 at 1791.803 kb on + strand, within RR42_RS28700 at 1791.804 kb on - strand, within RR42_RS28700 at 1791.806 kb on + strand, within RR42_RS28700 at 1791.836 kb on + strand, within RR42_RS28700 at 1791.849 kb on - strand, within RR42_RS28700 at 1791.849 kb on - strand, within RR42_RS28700 at 1791.863 kb on + strand, within RR42_RS28700 at 1791.881 kb on + strand, within RR42_RS28700 at 1791.881 kb on + strand, within RR42_RS28700 at 1792.212 kb on + strand at 1792.345 kb on + strand, within RR42_RS28705 at 1792.345 kb on + strand, within RR42_RS28705 at 1792.345 kb on + strand, within RR42_RS28705 at 1792.551 kb on + strand at 1792.551 kb on + strand at 1792.563 kb on + strand at 1792.580 kb on - strand at 1792.626 kb on + strand at 1792.626 kb on + strand at 1792.856 kb on - strand, within RR42_RS28710 at 1792.888 kb on + strand, within RR42_RS28710 at 1792.888 kb on + strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.949 kb on - strand, within RR42_RS28710 at 1792.949 kb on - strand, within RR42_RS28710 at 1793.212 kb on + strand, within RR42_RS28710 at 1793.401 kb on + strand, within RR42_RS28710 at 1793.401 kb on + strand, within RR42_RS28710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 1,791,262 + -0.4 1,791,263 - +1.9 1,791,446 - -0.2 1,791,494 + +0.0 1,791,498 + +0.3 1,791,592 - RR42_RS28695 0.19 -0.8 1,791,601 + RR42_RS28695 0.23 +0.1 1,791,745 + +0.4 1,791,758 + -0.1 1,791,768 - +0.4 1,791,777 - -0.2 1,791,777 - -1.5 1,791,800 + RR42_RS28700 0.13 +0.1 1,791,800 + RR42_RS28700 0.13 -0.1 1,791,801 - RR42_RS28700 0.13 -0.4 1,791,801 - RR42_RS28700 0.13 -1.1 1,791,803 + RR42_RS28700 0.13 -1.0 1,791,803 + RR42_RS28700 0.13 -0.9 1,791,803 + RR42_RS28700 0.13 -0.2 1,791,804 - RR42_RS28700 0.14 -0.2 1,791,806 + RR42_RS28700 0.14 +0.8 1,791,836 + RR42_RS28700 0.23 +0.8 1,791,849 - RR42_RS28700 0.26 +0.2 1,791,849 - RR42_RS28700 0.26 +0.3 1,791,863 + RR42_RS28700 0.30 -0.1 1,791,881 + RR42_RS28700 0.35 +0.7 1,791,881 + RR42_RS28700 0.35 +0.9 1,792,212 + -0.3 1,792,345 + RR42_RS28705 0.39 +0.6 1,792,345 + RR42_RS28705 0.39 +0.5 1,792,345 + RR42_RS28705 0.39 -0.5 1,792,551 + -0.7 1,792,551 + +0.1 1,792,563 + +0.2 1,792,580 - -0.9 1,792,626 + -0.4 1,792,626 + +0.2 1,792,856 - RR42_RS28710 0.16 +0.8 1,792,888 + RR42_RS28710 0.18 +0.9 1,792,888 + RR42_RS28710 0.18 -0.4 1,792,889 - RR42_RS28710 0.18 -0.6 1,792,889 - RR42_RS28710 0.18 -0.7 1,792,889 - RR42_RS28710 0.18 +0.3 1,792,889 - RR42_RS28710 0.18 +0.0 1,792,889 - RR42_RS28710 0.18 -0.1 1,792,949 - RR42_RS28710 0.23 +0.4 1,792,949 - RR42_RS28710 0.23 +0.4 1,793,212 + RR42_RS28710 0.42 -0.5 1,793,401 + RR42_RS28710 0.56 -0.7 1,793,401 + RR42_RS28710 0.56 -0.5
Or see this region's nucleotide sequence