Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28150 and RR42_RS28155 are separated by 47 nucleotides RR42_RS28155 and RR42_RS28160 are separated by 79 nucleotides
RR42_RS28150: RR42_RS28150 - EmrB/QacA subfamily drug resistance transporter, at 1,672,622 to 1,674,016
_RS28150
RR42_RS28155: RR42_RS28155 - hypothetical protein, at 1,674,064 to 1,674,462
_RS28155
RR42_RS28160: RR42_RS28160 - carboxylesterase, at 1,674,542 to 1,675,228
_RS28160
Position (kb) 1674
1675 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1673.160 kb on + strand, within RR42_RS28150 at 1673.169 kb on - strand, within RR42_RS28150 at 1673.169 kb on - strand, within RR42_RS28150 at 1673.169 kb on - strand, within RR42_RS28150 at 1673.339 kb on + strand, within RR42_RS28150 at 1673.339 kb on + strand, within RR42_RS28150 at 1673.339 kb on + strand, within RR42_RS28150 at 1673.340 kb on - strand, within RR42_RS28150 at 1673.498 kb on + strand, within RR42_RS28150 at 1673.628 kb on + strand, within RR42_RS28150 at 1673.628 kb on + strand, within RR42_RS28150 at 1673.629 kb on - strand, within RR42_RS28150 at 1673.629 kb on - strand, within RR42_RS28150 at 1673.898 kb on - strand at 1673.914 kb on + strand at 1674.003 kb on + strand at 1674.344 kb on + strand, within RR42_RS28155 at 1674.345 kb on - strand, within RR42_RS28155 at 1674.497 kb on + strand at 1674.630 kb on + strand, within RR42_RS28160 at 1674.630 kb on + strand, within RR42_RS28160 at 1674.630 kb on + strand, within RR42_RS28160 at 1674.631 kb on - strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.795 kb on + strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.796 kb on - strand, within RR42_RS28160 at 1674.850 kb on + strand, within RR42_RS28160 at 1674.851 kb on - strand, within RR42_RS28160 at 1674.851 kb on - strand, within RR42_RS28160 at 1674.852 kb on + strand, within RR42_RS28160 at 1674.852 kb on + strand, within RR42_RS28160 at 1675.033 kb on - strand, within RR42_RS28160 at 1675.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 1,673,160 + RR42_RS28150 0.39 -0.3 1,673,169 - RR42_RS28150 0.39 +2.9 1,673,169 - RR42_RS28150 0.39 +1.9 1,673,169 - RR42_RS28150 0.39 +0.4 1,673,339 + RR42_RS28150 0.51 -1.6 1,673,339 + RR42_RS28150 0.51 -0.1 1,673,339 + RR42_RS28150 0.51 -0.6 1,673,340 - RR42_RS28150 0.51 -0.1 1,673,498 + RR42_RS28150 0.63 -0.0 1,673,628 + RR42_RS28150 0.72 -0.2 1,673,628 + RR42_RS28150 0.72 +0.2 1,673,629 - RR42_RS28150 0.72 -0.0 1,673,629 - RR42_RS28150 0.72 -0.7 1,673,898 - +0.6 1,673,914 + -0.4 1,674,003 + -0.5 1,674,344 + RR42_RS28155 0.70 +1.5 1,674,345 - RR42_RS28155 0.70 -0.5 1,674,497 + +0.8 1,674,630 + RR42_RS28160 0.13 +1.3 1,674,630 + RR42_RS28160 0.13 +0.3 1,674,630 + RR42_RS28160 0.13 -0.4 1,674,631 - RR42_RS28160 0.13 -0.1 1,674,795 + RR42_RS28160 0.37 +0.1 1,674,795 + RR42_RS28160 0.37 -0.0 1,674,795 + RR42_RS28160 0.37 -0.1 1,674,795 + RR42_RS28160 0.37 -0.3 1,674,796 - RR42_RS28160 0.37 +1.1 1,674,796 - RR42_RS28160 0.37 +0.7 1,674,796 - RR42_RS28160 0.37 -1.7 1,674,796 - RR42_RS28160 0.37 -1.0 1,674,796 - RR42_RS28160 0.37 +0.4 1,674,796 - RR42_RS28160 0.37 -0.4 1,674,796 - RR42_RS28160 0.37 +2.6 1,674,796 - RR42_RS28160 0.37 +0.6 1,674,850 + RR42_RS28160 0.45 -1.8 1,674,851 - RR42_RS28160 0.45 +1.3 1,674,851 - RR42_RS28160 0.45 +0.6 1,674,852 + RR42_RS28160 0.45 -0.6 1,674,852 + RR42_RS28160 0.45 +1.0 1,675,033 - RR42_RS28160 0.71 +0.2 1,675,361 - +0.2
Or see this region's nucleotide sequence