Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27720

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27710 and RR42_RS27715 are separated by 203 nucleotidesRR42_RS27715 and RR42_RS27720 are separated by 17 nucleotidesRR42_RS27720 and RR42_RS27725 are separated by 5 nucleotidesRR42_RS27725 and RR42_RS27730 are separated by 102 nucleotides RR42_RS27710: RR42_RS27710 - LysR family transcriptional regulator, at 1,580,794 to 1,581,705 _RS27710 RR42_RS27715: RR42_RS27715 - hypothetical protein, at 1,581,909 to 1,582,556 _RS27715 RR42_RS27720: RR42_RS27720 - MFS transporter, at 1,582,574 to 1,583,896 _RS27720 RR42_RS27725: RR42_RS27725 - GntR family transcriptional regulator, at 1,583,902 to 1,584,612 _RS27725 RR42_RS27730: RR42_RS27730 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,584,715 to 1,585,674 _RS27730 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -2 -1 0 1 2at 1581.590 kb on + strand, within RR42_RS27710at 1581.832 kb on + strandat 1582.041 kb on + strand, within RR42_RS27715at 1582.068 kb on + strand, within RR42_RS27715at 1582.081 kb on - strand, within RR42_RS27715at 1582.120 kb on - strand, within RR42_RS27715at 1582.120 kb on - strand, within RR42_RS27715at 1582.345 kb on - strand, within RR42_RS27715at 1582.369 kb on + strand, within RR42_RS27715at 1582.370 kb on - strand, within RR42_RS27715at 1582.370 kb on - strand, within RR42_RS27715at 1582.515 kb on + strandat 1582.685 kb on + strandat 1582.701 kb on - strandat 1582.701 kb on - strandat 1582.701 kb on - strandat 1582.703 kb on - strandat 1582.787 kb on + strand, within RR42_RS27720at 1582.787 kb on + strand, within RR42_RS27720at 1582.787 kb on + strand, within RR42_RS27720at 1582.788 kb on - strand, within RR42_RS27720at 1582.928 kb on + strand, within RR42_RS27720at 1582.928 kb on + strand, within RR42_RS27720at 1582.928 kb on + strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1582.929 kb on - strand, within RR42_RS27720at 1583.119 kb on + strand, within RR42_RS27720at 1583.399 kb on + strand, within RR42_RS27720at 1583.399 kb on + strand, within RR42_RS27720at 1583.399 kb on + strand, within RR42_RS27720at 1583.400 kb on - strand, within RR42_RS27720at 1583.400 kb on - strand, within RR42_RS27720at 1583.526 kb on + strand, within RR42_RS27720at 1583.528 kb on + strand, within RR42_RS27720at 1583.528 kb on + strand, within RR42_RS27720at 1583.651 kb on + strand, within RR42_RS27720at 1583.652 kb on - strand, within RR42_RS27720at 1583.702 kb on + strand, within RR42_RS27720at 1583.723 kb on + strand, within RR42_RS27720at 1583.725 kb on + strand, within RR42_RS27720at 1583.725 kb on + strand, within RR42_RS27720at 1583.725 kb on + strand, within RR42_RS27720at 1583.816 kb on + strandat 1583.816 kb on + strandat 1583.816 kb on + strandat 1583.817 kb on - strandat 1584.292 kb on + strand, within RR42_RS27725at 1584.537 kb on + strand, within RR42_RS27725at 1584.539 kb on + strand, within RR42_RS27725at 1584.540 kb on - strand, within RR42_RS27725at 1584.540 kb on - strand, within RR42_RS27725at 1584.666 kb on + strandat 1584.666 kb on + strandat 1584.667 kb on - strandat 1584.717 kb on - strandat 1584.803 kb on + strandat 1584.890 kb on + strand, within RR42_RS27730

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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1,581,590 + RR42_RS27710 0.87 -0.3
1,581,832 + -0.8
1,582,041 + RR42_RS27715 0.20 -0.1
1,582,068 + RR42_RS27715 0.25 +1.4
1,582,081 - RR42_RS27715 0.27 +0.2
1,582,120 - RR42_RS27715 0.33 -0.4
1,582,120 - RR42_RS27715 0.33 -1.4
1,582,345 - RR42_RS27715 0.67 -1.4
1,582,369 + RR42_RS27715 0.71 -0.3
1,582,370 - RR42_RS27715 0.71 +1.1
1,582,370 - RR42_RS27715 0.71 +0.1
1,582,515 + -0.2
1,582,685 + -0.7
1,582,701 - -1.0
1,582,701 - -0.2
1,582,701 - +0.6
1,582,703 - +0.0
1,582,787 + RR42_RS27720 0.16 +0.8
1,582,787 + RR42_RS27720 0.16 -1.4
1,582,787 + RR42_RS27720 0.16 +1.3
1,582,788 - RR42_RS27720 0.16 -0.9
1,582,928 + RR42_RS27720 0.27 +0.3
1,582,928 + RR42_RS27720 0.27 -1.7
1,582,928 + RR42_RS27720 0.27 +0.5
1,582,929 - RR42_RS27720 0.27 -0.3
1,582,929 - RR42_RS27720 0.27 +2.3
1,582,929 - RR42_RS27720 0.27 -0.2
1,582,929 - RR42_RS27720 0.27 +0.2
1,582,929 - RR42_RS27720 0.27 -0.5
1,582,929 - RR42_RS27720 0.27 +0.8
1,582,929 - RR42_RS27720 0.27 +0.6
1,582,929 - RR42_RS27720 0.27 +0.8
1,583,119 + RR42_RS27720 0.41 -2.6
1,583,399 + RR42_RS27720 0.62 +0.1
1,583,399 + RR42_RS27720 0.62 +0.2
1,583,399 + RR42_RS27720 0.62 +1.0
1,583,400 - RR42_RS27720 0.62 -1.6
1,583,400 - RR42_RS27720 0.62 +1.5
1,583,526 + RR42_RS27720 0.72 -0.7
1,583,528 + RR42_RS27720 0.72 +0.2
1,583,528 + RR42_RS27720 0.72 +0.6
1,583,651 + RR42_RS27720 0.81 +0.5
1,583,652 - RR42_RS27720 0.81 +0.9
1,583,702 + RR42_RS27720 0.85 +0.3
1,583,723 + RR42_RS27720 0.87 -0.5
1,583,725 + RR42_RS27720 0.87 -0.3
1,583,725 + RR42_RS27720 0.87 +1.3
1,583,725 + RR42_RS27720 0.87 +0.6
1,583,816 + +0.7
1,583,816 + +0.1
1,583,816 + +0.5
1,583,817 - -0.5
1,584,292 + RR42_RS27725 0.55 +0.5
1,584,537 + RR42_RS27725 0.89 -1.0
1,584,539 + RR42_RS27725 0.90 -1.4
1,584,540 - RR42_RS27725 0.90 -0.5
1,584,540 - RR42_RS27725 0.90 +1.2
1,584,666 + -1.7
1,584,666 + +0.2
1,584,667 - -0.4
1,584,717 - +0.6
1,584,803 + +1.0
1,584,890 + RR42_RS27730 0.18 -0.2

Or see this region's nucleotide sequence