Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26560

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26550 and RR42_RS26555 are separated by 235 nucleotidesRR42_RS26555 and RR42_RS26560 are separated by 269 nucleotidesRR42_RS26560 and RR42_RS26565 are separated by 166 nucleotides RR42_RS26550: RR42_RS26550 - gluconolactonase, at 1,312,159 to 1,313,103 _RS26550 RR42_RS26555: RR42_RS26555 - tRNA-Met, at 1,313,339 to 1,313,414 _RS26555 RR42_RS26560: RR42_RS26560 - hypothetical protein, at 1,313,684 to 1,313,923 _RS26560 RR42_RS26565: RR42_RS26565 - 5'-3' exonuclease, at 1,314,090 to 1,314,896 _RS26565 Position (kb) 1313 1314Strain fitness (log2 ratio) -1 0 1at 1312.806 kb on + strand, within RR42_RS26550at 1312.806 kb on + strand, within RR42_RS26550at 1312.806 kb on + strand, within RR42_RS26550at 1312.814 kb on - strand, within RR42_RS26550at 1312.888 kb on + strand, within RR42_RS26550at 1312.888 kb on + strand, within RR42_RS26550at 1312.888 kb on + strand, within RR42_RS26550at 1312.889 kb on - strand, within RR42_RS26550at 1312.889 kb on - strand, within RR42_RS26550at 1313.321 kb on + strandat 1313.321 kb on + strandat 1313.378 kb on + strand, within RR42_RS26555at 1313.425 kb on + strandat 1313.448 kb on + strandat 1313.464 kb on + strandat 1313.465 kb on - strandat 1313.582 kb on + strandat 1313.582 kb on + strandat 1313.850 kb on + strand, within RR42_RS26560at 1313.850 kb on + strand, within RR42_RS26560at 1313.851 kb on - strand, within RR42_RS26560at 1313.851 kb on - strand, within RR42_RS26560at 1313.851 kb on - strand, within RR42_RS26560at 1313.891 kb on + strand, within RR42_RS26560at 1313.892 kb on - strand, within RR42_RS26560at 1313.933 kb on + strandat 1313.934 kb on - strandat 1313.934 kb on - strandat 1313.934 kb on - strandat 1314.041 kb on - strandat 1314.103 kb on + strandat 1314.104 kb on - strandat 1314.104 kb on - strandat 1314.104 kb on - strandat 1314.104 kb on - strandat 1314.104 kb on - strandat 1314.295 kb on - strand, within RR42_RS26565at 1314.295 kb on - strand, within RR42_RS26565at 1314.411 kb on + strand, within RR42_RS26565at 1314.444 kb on + strand, within RR42_RS26565at 1314.445 kb on - strand, within RR42_RS26565at 1314.478 kb on + strand, within RR42_RS26565at 1314.589 kb on - strand, within RR42_RS26565at 1314.589 kb on - strand, within RR42_RS26565at 1314.634 kb on - strand, within RR42_RS26565at 1314.653 kb on + strand, within RR42_RS26565at 1314.665 kb on + strand, within RR42_RS26565at 1314.666 kb on - strand, within RR42_RS26565at 1314.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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1,312,806 + RR42_RS26550 0.68 -0.5
1,312,806 + RR42_RS26550 0.68 +0.8
1,312,806 + RR42_RS26550 0.68 +0.6
1,312,814 - RR42_RS26550 0.69 +0.5
1,312,888 + RR42_RS26550 0.77 +1.0
1,312,888 + RR42_RS26550 0.77 +1.5
1,312,888 + RR42_RS26550 0.77 -1.0
1,312,889 - RR42_RS26550 0.77 +0.9
1,312,889 - RR42_RS26550 0.77 +0.6
1,313,321 + +0.3
1,313,321 + -0.1
1,313,378 + RR42_RS26555 0.51 +0.8
1,313,425 + -0.2
1,313,448 + -0.7
1,313,464 + -0.3
1,313,465 - -1.0
1,313,582 + -1.0
1,313,582 + +0.3
1,313,850 + RR42_RS26560 0.69 -1.1
1,313,850 + RR42_RS26560 0.69 +1.4
1,313,851 - RR42_RS26560 0.70 +0.1
1,313,851 - RR42_RS26560 0.70 -0.2
1,313,851 - RR42_RS26560 0.70 -1.2
1,313,891 + RR42_RS26560 0.86 +0.8
1,313,892 - RR42_RS26560 0.87 +0.1
1,313,933 + +0.8
1,313,934 - -0.5
1,313,934 - +0.8
1,313,934 - +0.1
1,314,041 - -0.9
1,314,103 + -0.2
1,314,104 - +0.4
1,314,104 - -1.0
1,314,104 - +0.7
1,314,104 - +1.4
1,314,104 - +0.3
1,314,295 - RR42_RS26565 0.25 +0.5
1,314,295 - RR42_RS26565 0.25 -0.7
1,314,411 + RR42_RS26565 0.40 -1.1
1,314,444 + RR42_RS26565 0.44 -0.6
1,314,445 - RR42_RS26565 0.44 -0.2
1,314,478 + RR42_RS26565 0.48 -0.3
1,314,589 - RR42_RS26565 0.62 -0.3
1,314,589 - RR42_RS26565 0.62 -0.5
1,314,634 - RR42_RS26565 0.67 -0.1
1,314,653 + RR42_RS26565 0.70 -0.2
1,314,665 + RR42_RS26565 0.71 -1.3
1,314,666 - RR42_RS26565 0.71 -0.8
1,314,921 - +0.6

Or see this region's nucleotide sequence