Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26000

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
1,176,309	+		RR42_RS25995	0.60	+0.3
1,176,514	+		RR42_RS25995	0.70	+0.2
1,176,529	+		RR42_RS25995	0.71	+1.1
1,176,529	+		RR42_RS25995	0.71	+0.2
1,176,529	+		RR42_RS25995	0.71	+0.4
1,176,529	+		RR42_RS25995	0.71	-0.6
1,176,529	+		RR42_RS25995	0.71	-0.4
1,176,529	+		RR42_RS25995	0.71	-0.0
1,176,530	-		RR42_RS25995	0.71	-0.1
1,176,530	-		RR42_RS25995	0.71	-0.7
1,176,530	-		RR42_RS25995	0.71	+0.3
1,176,533	+		RR42_RS25995	0.71	-2.5
1,176,534	-		RR42_RS25995	0.71	-1.2
1,176,534	-		RR42_RS25995	0.71	+0.7
1,176,534	-		RR42_RS25995	0.71	-0.3
1,176,534	-		RR42_RS25995	0.71	-0.5
1,176,534	-		RR42_RS25995	0.71	-0.6
1,176,561	-		RR42_RS25995	0.73	+0.3
1,176,806	+		RR42_RS25995	0.85	-0.1
1,176,806	+		RR42_RS25995	0.85	+0.6
1,176,824	+		RR42_RS25995	0.86	-0.2
1,176,974	+				+0.2
1,176,992	+				-0.9
1,177,218	+				-0.1
1,177,218	+				-0.6
1,177,236	-				-0.3
1,177,293	-				-0.2
1,177,307	-				-0.5
1,177,307	-				+0.6
1,177,307	-				+1.2
1,177,307	-				-0.8
1,177,513	+		RR42_RS26000	0.28	-1.0
1,177,534	+		RR42_RS26000	0.30	-1.4
1,177,534	+		RR42_RS26000	0.30	-0.9
1,177,535	-		RR42_RS26000	0.31	+0.1
1,177,535	-		RR42_RS26000	0.31	-0.7
1,177,591	+		RR42_RS26000	0.38	-1.2
1,177,591	+		RR42_RS26000	0.38	+1.1
1,177,709	-		RR42_RS26000	0.53	+0.2
1,177,717	+		RR42_RS26000	0.54	-0.1
1,177,793	-		RR42_RS26000	0.64	+0.5
1,177,909	+		RR42_RS26000	0.80	-0.6
1,177,909	+		RR42_RS26000	0.80	+0.8
1,177,909	+		RR42_RS26000	0.80	+1.3
1,177,909	+		RR42_RS26000	0.80	-2.2
1,177,910	-		RR42_RS26000	0.80	+0.8
1,178,052	+				+0.0
1,178,053	-				+0.3
1,178,195	+				-0.8
1,178,201	+				+1.0
1,178,202	-				+0.8
1,178,213	+				-0.4
1,178,214	-				+1.7
1,178,217	+				-0.6
1,178,218	-				-0.2
1,178,218	-				+0.0
1,178,228	+				+0.8
1,178,317	-				-0.1
1,178,362	+				-0.4
1,178,363	-				-0.2
1,178,367	+				+0.2
1,178,414	-				+0.3
1,178,809	-		RR42_RS26005	0.30	+0.4
1,178,809	-		RR42_RS26005	0.30	-0.7
1,178,809	-		RR42_RS26005	0.30	+0.2