Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25150 and RR42_RS25155 are separated by 228 nucleotides RR42_RS25155 and RR42_RS25160 are separated by 81 nucleotides
RR42_RS25150: RR42_RS25150 - hypothetical protein, at 982,888 to 984,288
_RS25150
RR42_RS25155: RR42_RS25155 - hypothetical protein, at 984,517 to 985,125
_RS25155
RR42_RS25160: RR42_RS25160 - hypothetical protein, at 985,207 to 985,593
_RS25160
Position (kb) 985
986 Strain fitness (log2 ratio) -1
0
1
2 at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.569 kb on + strand at 984.922 kb on - strand, within RR42_RS25155 at 984.923 kb on + strand, within RR42_RS25155 at 984.923 kb on + strand, within RR42_RS25155 at 984.923 kb on + strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.961 kb on + strand, within RR42_RS25155 at 984.961 kb on + strand, within RR42_RS25155 at 984.962 kb on - strand, within RR42_RS25155 at 985.048 kb on + strand, within RR42_RS25155 at 985.216 kb on - strand at 985.216 kb on - strand at 985.452 kb on - strand, within RR42_RS25160 at 985.520 kb on + strand, within RR42_RS25160 at 985.521 kb on - strand, within RR42_RS25160 at 985.521 kb on - strand, within RR42_RS25160 at 985.521 kb on - strand, within RR42_RS25160 at 985.660 kb on + strand at 985.873 kb on + strand at 985.874 kb on - strand at 985.874 kb on - strand at 985.885 kb on - strand at 985.934 kb on + strand at 985.934 kb on + strand at 986.012 kb on + strand at 986.166 kb on + strand at 986.215 kb on - strand at 986.237 kb on + strand at 986.259 kb on - strand at 986.275 kb on - strand at 986.290 kb on + strand at 986.290 kb on + strand at 986.291 kb on - strand at 986.297 kb on + strand at 986.297 kb on + strand at 986.298 kb on - strand at 986.346 kb on + strand at 986.347 kb on - strand at 986.366 kb on + strand at 986.367 kb on - strand at 986.391 kb on - strand at 986.423 kb on + strand at 986.424 kb on - strand at 986.442 kb on - strand at 986.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 984,501 + +1.2 984,502 - +0.7 984,502 - +0.3 984,569 + +0.2 984,922 - RR42_RS25155 0.67 -0.1 984,923 + RR42_RS25155 0.67 +0.0 984,923 + RR42_RS25155 0.67 -0.7 984,923 + RR42_RS25155 0.67 -0.5 984,924 - RR42_RS25155 0.67 +1.3 984,924 - RR42_RS25155 0.67 -0.3 984,924 - RR42_RS25155 0.67 -0.2 984,924 - RR42_RS25155 0.67 +0.5 984,961 + RR42_RS25155 0.73 -1.0 984,961 + RR42_RS25155 0.73 -0.0 984,962 - RR42_RS25155 0.73 -0.1 985,048 + RR42_RS25155 0.87 -1.6 985,216 - -0.7 985,216 - +1.6 985,452 - RR42_RS25160 0.63 +2.2 985,520 + RR42_RS25160 0.81 +1.4 985,521 - RR42_RS25160 0.81 +1.6 985,521 - RR42_RS25160 0.81 +0.6 985,521 - RR42_RS25160 0.81 +0.1 985,660 + +1.1 985,873 + -0.6 985,874 - -0.5 985,874 - -0.8 985,885 - +0.2 985,934 + +0.4 985,934 + +0.9 986,012 + -0.5 986,166 + -1.5 986,215 - +1.9 986,237 + +0.5 986,259 - +1.2 986,275 - -0.6 986,290 + +0.5 986,290 + -0.1 986,291 - -0.3 986,297 + +1.1 986,297 + +0.5 986,298 - -0.2 986,346 + -0.2 986,347 - +0.3 986,366 + -1.2 986,367 - -0.6 986,391 - -0.4 986,423 + -0.3 986,424 - -0.6 986,442 - +0.4 986,460 + +0.4
Or see this region's nucleotide sequence