Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25015

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25010 and RR42_RS25015 are separated by 150 nucleotidesRR42_RS25015 and RR42_RS25020 are separated by 22 nucleotidesRR42_RS25020 and RR42_RS25025 are separated by 21 nucleotides RR42_RS25010: RR42_RS25010 - betaine-aldehyde dehydrogenase, at 948,856 to 950,313 _RS25010 RR42_RS25015: RR42_RS25015 - gluconolactonase, at 950,464 to 951,348 _RS25015 RR42_RS25020: RR42_RS25020 - amino acid ABC transporter ATPase, at 951,371 to 952,129 _RS25020 RR42_RS25025: RR42_RS25025 - sugar ABC transporter ATPase, at 952,151 to 952,921 _RS25025 Position (kb) 950 951 952Strain fitness (log2 ratio) -1 0 1at 949.881 kb on + strand, within RR42_RS25010at 949.881 kb on + strand, within RR42_RS25010at 949.881 kb on + strand, within RR42_RS25010at 949.882 kb on - strand, within RR42_RS25010at 949.946 kb on + strand, within RR42_RS25010at 949.987 kb on - strand, within RR42_RS25010at 950.067 kb on + strand, within RR42_RS25010at 950.249 kb on - strandat 950.397 kb on - strandat 950.397 kb on - strandat 950.397 kb on - strandat 950.600 kb on + strand, within RR42_RS25015at 950.600 kb on + strand, within RR42_RS25015at 950.601 kb on - strand, within RR42_RS25015at 951.263 kb on + strandat 951.269 kb on + strandat 951.269 kb on + strandat 951.269 kb on + strandat 951.270 kb on - strandat 951.270 kb on - strandat 951.396 kb on + strandat 951.397 kb on - strandat 952.164 kb on + strandat 952.165 kb on - strandat 952.242 kb on + strand, within RR42_RS25025at 952.243 kb on - strand, within RR42_RS25025at 952.243 kb on - strand, within RR42_RS25025at 952.243 kb on - strand, within RR42_RS25025at 952.248 kb on + strand, within RR42_RS25025at 952.249 kb on - strand, within RR42_RS25025

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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949,881 + RR42_RS25010 0.70 +0.5
949,881 + RR42_RS25010 0.70 +0.3
949,881 + RR42_RS25010 0.70 -0.4
949,882 - RR42_RS25010 0.70 +0.3
949,946 + RR42_RS25010 0.75 -0.2
949,987 - RR42_RS25010 0.78 +0.8
950,067 + RR42_RS25010 0.83 -1.1
950,249 - +0.6
950,397 - -1.1
950,397 - -0.5
950,397 - -0.6
950,600 + RR42_RS25015 0.15 -1.0
950,600 + RR42_RS25015 0.15 -0.8
950,601 - RR42_RS25015 0.15 -0.7
951,263 + -0.7
951,269 + +0.4
951,269 + +0.5
951,269 + -0.2
951,270 - -0.2
951,270 - +0.5
951,396 + -0.8
951,397 - -1.3
952,164 + -0.3
952,165 - -0.1
952,242 + RR42_RS25025 0.12 +1.6
952,243 - RR42_RS25025 0.12 +0.3
952,243 - RR42_RS25025 0.12 +0.2
952,243 - RR42_RS25025 0.12 -0.2
952,248 + RR42_RS25025 0.13 +0.7
952,249 - RR42_RS25025 0.13 +0.1

Or see this region's nucleotide sequence