Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23645 and RR42_RS23650 are separated by 84 nucleotides RR42_RS23650 and RR42_RS23655 are separated by 143 nucleotides
RR42_RS23645: RR42_RS23645 - flagellar hook protein, at 630,084 to 631,514
_RS23645
RR42_RS23650: RR42_RS23650 - flagellar protein, at 631,599 to 631,976
_RS23650
RR42_RS23655: RR42_RS23655 - flagellin, at 632,120 to 633,448
_RS23655
Position (kb) 631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 630.634 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.959 kb on - strand, within RR42_RS23645 at 631.043 kb on + strand, within RR42_RS23645 at 631.043 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.237 kb on + strand, within RR42_RS23645 at 631.238 kb on - strand, within RR42_RS23645 at 631.238 kb on - strand, within RR42_RS23645 at 631.238 kb on - strand, within RR42_RS23645 at 631.257 kb on - strand, within RR42_RS23645 at 631.315 kb on + strand, within RR42_RS23645 at 631.316 kb on - strand, within RR42_RS23645 at 631.316 kb on - strand, within RR42_RS23645 at 631.384 kb on + strand at 631.384 kb on + strand at 631.385 kb on - strand at 631.385 kb on - strand at 631.563 kb on + strand at 631.574 kb on + strand at 631.574 kb on + strand at 631.575 kb on - strand at 631.575 kb on - strand at 631.685 kb on + strand, within RR42_RS23650 at 631.685 kb on + strand, within RR42_RS23650 at 631.686 kb on - strand, within RR42_RS23650 at 632.122 kb on - strand at 632.179 kb on + strand at 632.179 kb on + strand at 632.180 kb on - strand at 632.180 kb on - strand at 632.180 kb on - strand at 632.532 kb on + strand, within RR42_RS23655 at 632.532 kb on + strand, within RR42_RS23655 at 632.532 kb on + strand, within RR42_RS23655 at 632.532 kb on + strand, within RR42_RS23655 at 632.533 kb on - strand, within RR42_RS23655 at 632.533 kb on - strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.706 kb on + strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.707 kb on - strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.733 kb on + strand, within RR42_RS23655 at 632.734 kb on - strand, within RR42_RS23655
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 630,634 + RR42_RS23645 0.38 +0.5 630,850 + RR42_RS23645 0.54 -0.3 630,850 + RR42_RS23645 0.54 +0.4 630,851 - RR42_RS23645 0.54 +1.0 630,851 - RR42_RS23645 0.54 -1.0 630,851 - RR42_RS23645 0.54 -0.4 630,851 - RR42_RS23645 0.54 +0.2 630,851 - RR42_RS23645 0.54 -0.1 630,851 - RR42_RS23645 0.54 -0.6 630,959 - RR42_RS23645 0.61 -0.0 631,043 + RR42_RS23645 0.67 -0.2 631,043 + RR42_RS23645 0.67 +0.4 631,237 + RR42_RS23645 0.81 -0.3 631,237 + RR42_RS23645 0.81 +1.0 631,237 + RR42_RS23645 0.81 -0.2 631,237 + RR42_RS23645 0.81 -0.7 631,237 + RR42_RS23645 0.81 +0.6 631,237 + RR42_RS23645 0.81 +0.8 631,238 - RR42_RS23645 0.81 +0.2 631,238 - RR42_RS23645 0.81 -0.8 631,238 - RR42_RS23645 0.81 -1.0 631,257 - RR42_RS23645 0.82 -0.5 631,315 + RR42_RS23645 0.86 +0.0 631,316 - RR42_RS23645 0.86 -0.0 631,316 - RR42_RS23645 0.86 -1.8 631,384 + +0.1 631,384 + -0.3 631,385 - -1.0 631,385 - -0.6 631,563 + +0.3 631,574 + +0.0 631,574 + -0.3 631,575 - -0.3 631,575 - +0.4 631,685 + RR42_RS23650 0.23 -1.3 631,685 + RR42_RS23650 0.23 -2.0 631,686 - RR42_RS23650 0.23 -0.5 632,122 - +0.0 632,179 + +0.2 632,179 + +0.0 632,180 - -0.6 632,180 - +0.2 632,180 - +0.0 632,532 + RR42_RS23655 0.31 -0.0 632,532 + RR42_RS23655 0.31 -1.5 632,532 + RR42_RS23655 0.31 +0.0 632,532 + RR42_RS23655 0.31 +0.5 632,533 - RR42_RS23655 0.31 -0.0 632,533 - RR42_RS23655 0.31 +0.3 632,706 + RR42_RS23655 0.44 +1.2 632,706 + RR42_RS23655 0.44 -0.5 632,706 + RR42_RS23655 0.44 +0.5 632,706 + RR42_RS23655 0.44 -0.1 632,706 + RR42_RS23655 0.44 -1.7 632,707 - RR42_RS23655 0.44 +0.3 632,707 - RR42_RS23655 0.44 +0.5 632,707 - RR42_RS23655 0.44 +0.1 632,707 - RR42_RS23655 0.44 -0.4 632,733 + RR42_RS23655 0.46 +0.4 632,733 + RR42_RS23655 0.46 +0.3 632,733 + RR42_RS23655 0.46 -0.3 632,733 + RR42_RS23655 0.46 -3.0 632,733 + RR42_RS23655 0.46 -0.5 632,733 + RR42_RS23655 0.46 +0.5 632,734 - RR42_RS23655 0.46 -0.0
Or see this region's nucleotide sequence