Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23360 and RR42_RS23365 overlap by 4 nucleotides RR42_RS23365 and RR42_RS23370 are separated by 44 nucleotides RR42_RS23370 and RR42_RS23375 overlap by 8 nucleotides
RR42_RS23360: RR42_RS23360 - flagellar biosynthesis protein flip, at 570,733 to 571,575
_RS23360
RR42_RS23365: RR42_RS23365 - flagellar biosynthesis protein FliO, at 571,572 to 572,042
_RS23365
RR42_RS23370: RR42_RS23370 - flagellar motor switch protein FliN, at 572,087 to 572,545
_RS23370
RR42_RS23375: RR42_RS23375 - flagellar motor switch protein FliM, at 572,538 to 573,545
_RS23375
Position (kb) 572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 571.134 kb on - strand, within RR42_RS23360 at 571.134 kb on - strand, within RR42_RS23360 at 571.145 kb on + strand, within RR42_RS23360 at 571.146 kb on - strand, within RR42_RS23360 at 571.800 kb on + strand, within RR42_RS23365 at 571.801 kb on - strand, within RR42_RS23365 at 572.190 kb on + strand, within RR42_RS23370 at 572.303 kb on + strand, within RR42_RS23370 at 572.304 kb on - strand, within RR42_RS23370 at 572.596 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.697 kb on + strand, within RR42_RS23375 at 572.698 kb on - strand, within RR42_RS23375 at 572.698 kb on - strand, within RR42_RS23375 at 572.698 kb on - strand, within RR42_RS23375 at 572.731 kb on - strand, within RR42_RS23375 at 572.821 kb on - strand, within RR42_RS23375 at 572.821 kb on - strand, within RR42_RS23375 at 573.002 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375 at 573.024 kb on + strand, within RR42_RS23375 at 573.046 kb on + strand, within RR42_RS23375 at 573.046 kb on + strand, within RR42_RS23375 at 573.047 kb on - strand, within RR42_RS23375 at 573.274 kb on + strand, within RR42_RS23375 at 573.275 kb on - strand, within RR42_RS23375 at 573.427 kb on + strand, within RR42_RS23375 at 573.428 kb on - strand, within RR42_RS23375 at 573.428 kb on - strand, within RR42_RS23375 at 573.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 571,134 - RR42_RS23360 0.48 -1.2 571,134 - RR42_RS23360 0.48 -0.2 571,145 + RR42_RS23360 0.49 +0.1 571,146 - RR42_RS23360 0.49 +1.2 571,800 + RR42_RS23365 0.48 -0.0 571,801 - RR42_RS23365 0.49 +0.2 572,190 + RR42_RS23370 0.22 +0.6 572,303 + RR42_RS23370 0.47 +0.1 572,304 - RR42_RS23370 0.47 +0.6 572,596 - -0.8 572,609 - +0.2 572,609 - -2.2 572,697 + RR42_RS23375 0.16 -0.1 572,698 - RR42_RS23375 0.16 +0.3 572,698 - RR42_RS23375 0.16 +0.8 572,698 - RR42_RS23375 0.16 -2.6 572,731 - RR42_RS23375 0.19 +0.1 572,821 - RR42_RS23375 0.28 -0.9 572,821 - RR42_RS23375 0.28 -0.9 573,002 + RR42_RS23375 0.46 -0.1 573,024 + RR42_RS23375 0.48 -0.7 573,024 + RR42_RS23375 0.48 -0.1 573,024 + RR42_RS23375 0.48 +1.6 573,024 + RR42_RS23375 0.48 +0.7 573,046 + RR42_RS23375 0.50 -0.5 573,046 + RR42_RS23375 0.50 -0.1 573,047 - RR42_RS23375 0.50 +1.2 573,274 + RR42_RS23375 0.73 -0.2 573,275 - RR42_RS23375 0.73 +0.8 573,427 + RR42_RS23375 0.88 -0.1 573,428 - RR42_RS23375 0.88 +1.8 573,428 - RR42_RS23375 0.88 +0.1 573,510 + -0.3
Or see this region's nucleotide sequence