Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23050 and RR42_RS23055 are separated by 55 nucleotides RR42_RS23055 and RR42_RS23060 are separated by 205 nucleotides
RR42_RS23050: RR42_RS23050 - 4-oxalomesaconate tautomerase, at 505,646 to 506,725
_RS23050
RR42_RS23055: RR42_RS23055 - ABC transporter substrate-binding protein, at 506,781 to 507,728
_RS23055
RR42_RS23060: RR42_RS23060 - hypothetical protein, at 507,934 to 508,926
_RS23060
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.866 kb on + strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.908 kb on + strand, within RR42_RS23050 at 506.023 kb on + strand, within RR42_RS23050 at 506.075 kb on + strand, within RR42_RS23050 at 506.076 kb on - strand, within RR42_RS23050 at 506.086 kb on + strand, within RR42_RS23050 at 506.221 kb on + strand, within RR42_RS23050 at 506.513 kb on + strand, within RR42_RS23050 at 506.514 kb on - strand, within RR42_RS23050 at 506.760 kb on + strand at 506.761 kb on - strand at 506.766 kb on + strand at 506.789 kb on + strand at 506.790 kb on - strand at 506.994 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.161 kb on - strand, within RR42_RS23055 at 507.223 kb on - strand, within RR42_RS23055 at 507.268 kb on + strand, within RR42_RS23055 at 507.309 kb on + strand, within RR42_RS23055 at 507.413 kb on - strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.973 kb on + strand at 507.974 kb on - strand at 507.974 kb on - strand at 508.044 kb on - strand, within RR42_RS23060 at 508.282 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.396 kb on + strand, within RR42_RS23060 at 508.495 kb on - strand, within RR42_RS23060 at 508.642 kb on + strand, within RR42_RS23060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 505,866 + RR42_RS23050 0.20 +0.3 505,867 - RR42_RS23050 0.20 +1.4 505,867 - RR42_RS23050 0.20 +0.7 505,867 - RR42_RS23050 0.20 +0.1 505,867 - RR42_RS23050 0.20 -0.5 505,867 - RR42_RS23050 0.20 -1.1 505,908 + RR42_RS23050 0.24 +0.8 506,023 + RR42_RS23050 0.35 -1.2 506,075 + RR42_RS23050 0.40 +0.2 506,076 - RR42_RS23050 0.40 +0.3 506,086 + RR42_RS23050 0.41 +1.2 506,221 + RR42_RS23050 0.53 +0.6 506,513 + RR42_RS23050 0.80 -0.4 506,514 - RR42_RS23050 0.80 +0.3 506,760 + +0.0 506,761 - +0.5 506,766 + +0.6 506,789 + +0.9 506,790 - -0.4 506,994 + RR42_RS23055 0.22 +0.3 507,023 + RR42_RS23055 0.26 +0.6 507,023 + RR42_RS23055 0.26 -1.3 507,024 - RR42_RS23055 0.26 +0.3 507,024 - RR42_RS23055 0.26 -0.2 507,084 + RR42_RS23055 0.32 -0.1 507,084 + RR42_RS23055 0.32 +0.6 507,161 - RR42_RS23055 0.40 -0.4 507,223 - RR42_RS23055 0.47 -0.3 507,268 + RR42_RS23055 0.51 +1.8 507,309 + RR42_RS23055 0.56 +0.8 507,413 - RR42_RS23055 0.67 -0.5 507,627 + RR42_RS23055 0.89 -1.5 507,627 + RR42_RS23055 0.89 -2.0 507,627 + RR42_RS23055 0.89 +1.1 507,628 - RR42_RS23055 0.89 -0.5 507,628 - RR42_RS23055 0.89 -1.4 507,973 + +1.9 507,974 - -1.6 507,974 - -0.0 508,044 - RR42_RS23060 0.11 -1.1 508,282 + RR42_RS23060 0.35 +0.1 508,294 + RR42_RS23060 0.36 -1.2 508,294 + RR42_RS23060 0.36 -0.4 508,363 + RR42_RS23060 0.43 +0.6 508,363 + RR42_RS23060 0.43 -1.6 508,396 + RR42_RS23060 0.47 +0.7 508,495 - RR42_RS23060 0.56 -1.2 508,642 + RR42_RS23060 0.71 -0.4
Or see this region's nucleotide sequence