Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22840 and RR42_RS22845 are separated by 115 nucleotides RR42_RS22845 and RR42_RS22850 are separated by 118 nucleotides
RR42_RS22840: RR42_RS22840 - DeoR family transcriptional regulator, at 455,951 to 457,186
_RS22840
RR42_RS22845: RR42_RS22845 - cell envelope biogenesis protein OmpA, at 457,302 to 457,796
_RS22845
RR42_RS22850: RR42_RS22850 - amino acid dehydrogenase, at 457,915 to 458,958
_RS22850
Position (kb) 457
458 Strain fitness (log2 ratio) -1
0
1
2 at 456.479 kb on + strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.480 kb on - strand, within RR42_RS22840 at 456.506 kb on - strand, within RR42_RS22840 at 456.791 kb on + strand, within RR42_RS22840 at 456.791 kb on + strand, within RR42_RS22840 at 456.806 kb on + strand, within RR42_RS22840 at 456.806 kb on + strand, within RR42_RS22840 at 457.006 kb on + strand, within RR42_RS22840 at 457.006 kb on + strand, within RR42_RS22840 at 457.033 kb on - strand, within RR42_RS22840 at 457.276 kb on + strand at 457.276 kb on + strand at 457.277 kb on - strand at 457.277 kb on - strand at 457.589 kb on + strand, within RR42_RS22845 at 457.916 kb on + strand at 457.916 kb on + strand at 457.917 kb on - strand at 458.072 kb on + strand, within RR42_RS22850 at 458.072 kb on + strand, within RR42_RS22850 at 458.088 kb on + strand, within RR42_RS22850 at 458.088 kb on + strand, within RR42_RS22850 at 458.088 kb on + strand, within RR42_RS22850 at 458.126 kb on + strand, within RR42_RS22850 at 458.127 kb on - strand, within RR42_RS22850 at 458.181 kb on + strand, within RR42_RS22850 at 458.570 kb on + strand, within RR42_RS22850 at 458.571 kb on - strand, within RR42_RS22850 at 458.605 kb on + strand, within RR42_RS22850 at 458.606 kb on - strand, within RR42_RS22850 at 458.606 kb on - strand, within RR42_RS22850 at 458.636 kb on + strand, within RR42_RS22850 at 458.637 kb on - strand, within RR42_RS22850 at 458.765 kb on + strand, within RR42_RS22850 at 458.765 kb on + strand, within RR42_RS22850 at 458.766 kb on - strand, within RR42_RS22850
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 456,479 + RR42_RS22840 0.43 -0.0 456,480 - RR42_RS22840 0.43 +0.0 456,480 - RR42_RS22840 0.43 -0.1 456,480 - RR42_RS22840 0.43 +0.2 456,480 - RR42_RS22840 0.43 -0.2 456,480 - RR42_RS22840 0.43 +0.6 456,506 - RR42_RS22840 0.45 +0.8 456,791 + RR42_RS22840 0.68 +1.3 456,791 + RR42_RS22840 0.68 +0.5 456,806 + RR42_RS22840 0.69 -1.0 456,806 + RR42_RS22840 0.69 -0.3 457,006 + RR42_RS22840 0.85 +0.5 457,006 + RR42_RS22840 0.85 +1.4 457,033 - RR42_RS22840 0.88 -0.0 457,276 + +0.3 457,276 + -0.6 457,277 - +0.4 457,277 - -0.1 457,589 + RR42_RS22845 0.58 -1.0 457,916 + -0.1 457,916 + -0.1 457,917 - -0.3 458,072 + RR42_RS22850 0.15 +1.1 458,072 + RR42_RS22850 0.15 +0.1 458,088 + RR42_RS22850 0.17 -0.2 458,088 + RR42_RS22850 0.17 +0.4 458,088 + RR42_RS22850 0.17 -0.6 458,126 + RR42_RS22850 0.20 +0.2 458,127 - RR42_RS22850 0.20 -0.9 458,181 + RR42_RS22850 0.25 +1.1 458,570 + RR42_RS22850 0.63 +1.0 458,571 - RR42_RS22850 0.63 +0.5 458,605 + RR42_RS22850 0.66 -0.4 458,606 - RR42_RS22850 0.66 +0.1 458,606 - RR42_RS22850 0.66 -0.8 458,636 + RR42_RS22850 0.69 +0.4 458,637 - RR42_RS22850 0.69 -1.0 458,765 + RR42_RS22850 0.81 +0.1 458,765 + RR42_RS22850 0.81 -0.7 458,766 - RR42_RS22850 0.82 +2.1
Or see this region's nucleotide sequence