Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22730

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22725 and RR42_RS22730 are separated by 480 nucleotidesRR42_RS22730 and RR42_RS22735 are separated by 20 nucleotidesRR42_RS22735 and RR42_RS22740 are separated by 121 nucleotides RR42_RS22725: RR42_RS22725 - phosphatidylethanolamine-binding protein, at 432,778 to 433,332 _RS22725 RR42_RS22730: RR42_RS22730 - pyridine nucleotide-disulfide oxidoreductase, at 433,813 to 435,018 _RS22730 RR42_RS22735: RR42_RS22735 - transcriptional regulator, at 435,039 to 435,578 _RS22735 RR42_RS22740: RR42_RS22740 - oxidoreductase, at 435,700 to 436,494 _RS22740 Position (kb) 433 434 435 436Strain fitness (log2 ratio) -2 -1 0 1at 432.847 kb on + strand, within RR42_RS22725at 432.847 kb on + strand, within RR42_RS22725at 432.847 kb on + strand, within RR42_RS22725at 432.847 kb on + strand, within RR42_RS22725at 432.910 kb on + strand, within RR42_RS22725at 432.910 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.921 kb on + strand, within RR42_RS22725at 432.922 kb on - strand, within RR42_RS22725at 432.922 kb on - strand, within RR42_RS22725at 432.922 kb on - strand, within RR42_RS22725at 433.034 kb on + strand, within RR42_RS22725at 433.039 kb on + strand, within RR42_RS22725at 433.057 kb on + strand, within RR42_RS22725at 433.059 kb on + strand, within RR42_RS22725at 433.060 kb on - strand, within RR42_RS22725at 433.139 kb on + strand, within RR42_RS22725at 433.198 kb on + strand, within RR42_RS22725at 433.198 kb on + strand, within RR42_RS22725at 433.199 kb on - strand, within RR42_RS22725at 433.199 kb on - strand, within RR42_RS22725at 433.322 kb on - strandat 433.342 kb on + strandat 433.343 kb on - strandat 433.433 kb on + strandat 433.434 kb on - strandat 433.793 kb on - strandat 433.819 kb on - strandat 433.825 kb on - strandat 433.963 kb on + strand, within RR42_RS22730at 434.116 kb on + strand, within RR42_RS22730at 434.117 kb on - strand, within RR42_RS22730at 434.117 kb on - strand, within RR42_RS22730at 434.117 kb on - strand, within RR42_RS22730at 434.117 kb on - strand, within RR42_RS22730at 434.136 kb on + strand, within RR42_RS22730at 434.233 kb on - strand, within RR42_RS22730at 434.233 kb on - strand, within RR42_RS22730at 434.274 kb on + strand, within RR42_RS22730at 434.275 kb on - strand, within RR42_RS22730at 434.693 kb on - strand, within RR42_RS22730at 434.693 kb on - strand, within RR42_RS22730at 434.719 kb on + strand, within RR42_RS22730at 434.719 kb on + strand, within RR42_RS22730at 434.719 kb on + strand, within RR42_RS22730at 434.720 kb on - strand, within RR42_RS22730at 434.720 kb on - strand, within RR42_RS22730at 435.011 kb on + strandat 435.016 kb on + strandat 435.105 kb on + strand, within RR42_RS22735at 435.105 kb on + strand, within RR42_RS22735at 435.106 kb on - strand, within RR42_RS22735at 435.106 kb on - strand, within RR42_RS22735at 435.452 kb on - strand, within RR42_RS22735at 435.495 kb on - strand, within RR42_RS22735at 435.605 kb on - strandat 435.615 kb on - strandat 435.617 kb on - strandat 435.712 kb on - strandat 435.780 kb on - strand, within RR42_RS22740at 435.780 kb on - strand, within RR42_RS22740

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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432,847 + RR42_RS22725 0.12 +0.2
432,847 + RR42_RS22725 0.12 -0.7
432,847 + RR42_RS22725 0.12 -0.5
432,847 + RR42_RS22725 0.12 -0.0
432,910 + RR42_RS22725 0.24 +0.4
432,910 + RR42_RS22725 0.24 -0.2
432,921 + RR42_RS22725 0.26 +0.4
432,921 + RR42_RS22725 0.26 -0.1
432,921 + RR42_RS22725 0.26 +1.4
432,921 + RR42_RS22725 0.26 -0.5
432,922 - RR42_RS22725 0.26 -0.4
432,922 - RR42_RS22725 0.26 +1.5
432,922 - RR42_RS22725 0.26 -0.1
433,034 + RR42_RS22725 0.46 -1.2
433,039 + RR42_RS22725 0.47 +0.1
433,057 + RR42_RS22725 0.50 +0.8
433,059 + RR42_RS22725 0.51 -0.1
433,060 - RR42_RS22725 0.51 +0.1
433,139 + RR42_RS22725 0.65 -0.4
433,198 + RR42_RS22725 0.76 -0.1
433,198 + RR42_RS22725 0.76 +0.2
433,199 - RR42_RS22725 0.76 -1.5
433,199 - RR42_RS22725 0.76 -0.2
433,322 - -0.0
433,342 + -0.9
433,343 - -2.0
433,433 + -0.6
433,434 - -2.2
433,793 - +1.5
433,819 - -2.4
433,825 - -0.3
433,963 + RR42_RS22730 0.12 +0.8
434,116 + RR42_RS22730 0.25 +0.1
434,117 - RR42_RS22730 0.25 +0.9
434,117 - RR42_RS22730 0.25 +0.4
434,117 - RR42_RS22730 0.25 -0.4
434,117 - RR42_RS22730 0.25 -0.9
434,136 + RR42_RS22730 0.27 -1.1
434,233 - RR42_RS22730 0.35 +0.3
434,233 - RR42_RS22730 0.35 +0.5
434,274 + RR42_RS22730 0.38 +1.0
434,275 - RR42_RS22730 0.38 +0.3
434,693 - RR42_RS22730 0.73 +0.8
434,693 - RR42_RS22730 0.73 -0.0
434,719 + RR42_RS22730 0.75 +1.0
434,719 + RR42_RS22730 0.75 +0.2
434,719 + RR42_RS22730 0.75 +0.7
434,720 - RR42_RS22730 0.75 +1.4
434,720 - RR42_RS22730 0.75 -0.5
435,011 + -0.3
435,016 + +0.0
435,105 + RR42_RS22735 0.12 +1.1
435,105 + RR42_RS22735 0.12 +0.2
435,106 - RR42_RS22735 0.12 -0.8
435,106 - RR42_RS22735 0.12 +0.5
435,452 - RR42_RS22735 0.76 +0.5
435,495 - RR42_RS22735 0.84 -0.0
435,605 - -0.7
435,615 - +0.1
435,617 - +0.1
435,712 - +1.0
435,780 - RR42_RS22740 0.10 -0.2
435,780 - RR42_RS22740 0.10 +0.5

Or see this region's nucleotide sequence