Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22560 and RR42_RS22565 are separated by 11 nucleotides RR42_RS22565 and RR42_RS22570 are separated by 273 nucleotides RR42_RS22570 and RR42_RS22575 are separated by 284 nucleotides
RR42_RS22560: RR42_RS22560 - hypothetical protein, at 398,970 to 399,152
_RS22560
RR42_RS22565: RR42_RS22565 - CopG family transcriptional regulator, at 399,164 to 399,553
_RS22565
RR42_RS22570: RR42_RS22570 - SAM-dependent methyltransferase, at 399,827 to 400,555
_RS22570
RR42_RS22575: RR42_RS22575 - hypothetical protein, at 400,840 to 401,649
_RS22575
Position (kb)
399
400
401 Strain fitness (log2 ratio)
-1
0
1 at 398.853 kb on - strand at 399.150 kb on + strand at 399.150 kb on + strand at 399.630 kb on - strand at 399.630 kb on - strand at 399.691 kb on + strand at 399.692 kb on - strand at 399.692 kb on - strand at 399.716 kb on + strand at 399.725 kb on + strand at 399.726 kb on - strand at 399.733 kb on + strand at 399.733 kb on + strand at 399.733 kb on + strand at 399.734 kb on - strand at 399.734 kb on - strand at 399.734 kb on - strand at 399.734 kb on - strand at 399.768 kb on + strand at 399.769 kb on - strand at 399.926 kb on + strand, within RR42_RS22570 at 400.326 kb on - strand, within RR42_RS22570 at 400.612 kb on - strand at 400.621 kb on - strand at 400.685 kb on + strand at 400.686 kb on - strand at 400.844 kb on + strand at 400.844 kb on + strand at 400.845 kb on - strand at 401.001 kb on + strand, within RR42_RS22575 at 401.416 kb on - strand, within RR42_RS22575
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 398,853 - +0.3 399,150 + -0.1 399,150 + +0.2 399,630 - -0.1 399,630 - +0.6 399,691 + +1.4 399,692 - -0.1 399,692 - -0.0 399,716 + -0.4 399,725 + -0.5 399,726 - +0.1 399,733 + -0.6 399,733 + -0.4 399,733 + +1.0 399,734 - +0.8 399,734 - -0.5 399,734 - +0.8 399,734 - -0.7 399,768 + +0.4 399,769 - +0.1 399,926 + RR42_RS22570 0.14 -1.2 400,326 - RR42_RS22570 0.68 -0.5 400,612 - +0.8 400,621 - -0.8 400,685 + -0.5 400,686 - +0.5 400,844 + -0.1 400,844 + +0.7 400,845 - +0.1 401,001 + RR42_RS22575 0.20 +0.2 401,416 - RR42_RS22575 0.71 +0.3
Or see this region's nucleotide sequence