Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21835

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21830 and RR42_RS21835 are separated by 116 nucleotidesRR42_RS21835 and RR42_RS21840 are separated by 37 nucleotidesRR42_RS21840 and RR42_RS21845 are separated by 109 nucleotides RR42_RS21830: RR42_RS21830 - transcriptional regulator, at 225,965 to 226,879 _RS21830 RR42_RS21835: RR42_RS21835 - muconate cycloisomerase, at 226,996 to 228,117 _RS21835 RR42_RS21840: RR42_RS21840 - muconolactone delta-isomerase, at 228,155 to 228,433 _RS21840 RR42_RS21845: RR42_RS21845 - LacI family transcriptional regulator, at 228,543 to 229,529 _RS21845 Position (kb) 226 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 226.040 kb on + strandat 226.066 kb on - strand, within RR42_RS21830at 226.066 kb on - strand, within RR42_RS21830at 226.276 kb on - strand, within RR42_RS21830at 226.276 kb on - strand, within RR42_RS21830at 226.491 kb on - strand, within RR42_RS21830at 226.491 kb on - strand, within RR42_RS21830at 226.572 kb on + strand, within RR42_RS21830at 226.573 kb on - strand, within RR42_RS21830at 226.801 kb on + strandat 226.802 kb on - strandat 226.857 kb on + strandat 226.857 kb on + strandat 226.857 kb on + strandat 226.871 kb on + strandat 226.871 kb on + strandat 226.872 kb on - strandat 226.872 kb on - strandat 226.872 kb on - strandat 226.872 kb on - strandat 226.920 kb on + strandat 226.921 kb on - strandat 226.921 kb on - strandat 226.921 kb on - strandat 226.955 kb on + strandat 226.956 kb on - strandat 226.956 kb on - strandat 226.956 kb on - strandat 226.956 kb on - strandat 226.971 kb on - strandat 226.971 kb on - strandat 226.977 kb on + strandat 226.977 kb on + strandat 226.978 kb on - strandat 227.167 kb on + strand, within RR42_RS21835at 227.167 kb on + strand, within RR42_RS21835at 227.167 kb on + strand, within RR42_RS21835at 227.209 kb on - strand, within RR42_RS21835at 227.212 kb on + strand, within RR42_RS21835at 227.213 kb on - strand, within RR42_RS21835at 227.213 kb on - strand, within RR42_RS21835at 228.025 kb on + strandat 228.180 kb on + strandat 228.180 kb on + strandat 228.180 kb on + strandat 228.180 kb on + strandat 228.180 kb on + strandat 228.180 kb on + strandat 228.181 kb on - strandat 228.181 kb on - strandat 228.181 kb on - strandat 228.302 kb on + strand, within RR42_RS21840at 228.302 kb on + strand, within RR42_RS21840at 228.302 kb on + strand, within RR42_RS21840at 228.311 kb on + strand, within RR42_RS21840at 228.311 kb on + strand, within RR42_RS21840at 228.312 kb on - strand, within RR42_RS21840at 228.312 kb on - strand, within RR42_RS21840at 228.312 kb on - strand, within RR42_RS21840at 228.380 kb on + strand, within RR42_RS21840at 228.380 kb on + strand, within RR42_RS21840at 228.381 kb on - strand, within RR42_RS21840at 228.432 kb on - strandat 228.554 kb on - strandat 228.633 kb on + strandat 228.633 kb on + strandat 228.634 kb on - strandat 228.880 kb on - strand, within RR42_RS21845at 228.930 kb on - strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.014 kb on + strand, within RR42_RS21845at 229.015 kb on - strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.020 kb on + strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.021 kb on - strand, within RR42_RS21845at 229.108 kb on - strand, within RR42_RS21845

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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226,040 + +1.1
226,066 - RR42_RS21830 0.11 +0.2
226,066 - RR42_RS21830 0.11 -1.0
226,276 - RR42_RS21830 0.34 +1.1
226,276 - RR42_RS21830 0.34 -0.4
226,491 - RR42_RS21830 0.57 -0.8
226,491 - RR42_RS21830 0.57 -0.8
226,572 + RR42_RS21830 0.66 -0.9
226,573 - RR42_RS21830 0.66 +2.1
226,801 + -1.3
226,802 - -1.7
226,857 + +1.3
226,857 + -1.0
226,857 + +0.7
226,871 + +0.6
226,871 + -1.3
226,872 - +0.1
226,872 - -0.5
226,872 - +0.4
226,872 - -0.5
226,920 + -0.4
226,921 - +0.7
226,921 - -1.0
226,921 - -1.9
226,955 + +0.2
226,956 - +0.4
226,956 - +1.3
226,956 - -1.7
226,956 - -0.1
226,971 - -0.6
226,971 - -0.2
226,977 + -0.7
226,977 + +1.9
226,978 - -0.5
227,167 + RR42_RS21835 0.15 -0.5
227,167 + RR42_RS21835 0.15 +2.1
227,167 + RR42_RS21835 0.15 -0.2
227,209 - RR42_RS21835 0.19 +1.2
227,212 + RR42_RS21835 0.19 +0.4
227,213 - RR42_RS21835 0.19 +0.5
227,213 - RR42_RS21835 0.19 +0.2
228,025 + -0.2
228,180 + -1.5
228,180 + -1.2
228,180 + -1.6
228,180 + -0.5
228,180 + +0.3
228,180 + +0.8
228,181 - -0.0
228,181 - -0.2
228,181 - +0.1
228,302 + RR42_RS21840 0.53 +1.1
228,302 + RR42_RS21840 0.53 -0.1
228,302 + RR42_RS21840 0.53 -0.8
228,311 + RR42_RS21840 0.56 +0.5
228,311 + RR42_RS21840 0.56 -0.4
228,312 - RR42_RS21840 0.56 -0.2
228,312 - RR42_RS21840 0.56 -1.2
228,312 - RR42_RS21840 0.56 -0.2
228,380 + RR42_RS21840 0.81 +3.2
228,380 + RR42_RS21840 0.81 -0.0
228,381 - RR42_RS21840 0.81 -3.0
228,432 - -0.4
228,554 - +0.4
228,633 + -0.5
228,633 + -0.7
228,634 - +0.5
228,880 - RR42_RS21845 0.34 -0.1
228,930 - RR42_RS21845 0.39 -0.5
229,014 + RR42_RS21845 0.48 -1.5
229,014 + RR42_RS21845 0.48 -0.7
229,014 + RR42_RS21845 0.48 -0.5
229,014 + RR42_RS21845 0.48 +0.5
229,015 - RR42_RS21845 0.48 -0.1
229,020 + RR42_RS21845 0.48 -0.2
229,020 + RR42_RS21845 0.48 -0.8
229,020 + RR42_RS21845 0.48 +0.1
229,020 + RR42_RS21845 0.48 -0.6
229,020 + RR42_RS21845 0.48 -0.3
229,020 + RR42_RS21845 0.48 +0.7
229,021 - RR42_RS21845 0.48 +0.6
229,021 - RR42_RS21845 0.48 -0.9
229,021 - RR42_RS21845 0.48 -0.9
229,021 - RR42_RS21845 0.48 -0.0
229,021 - RR42_RS21845 0.48 +0.8
229,021 - RR42_RS21845 0.48 -0.2
229,108 - RR42_RS21845 0.57 -0.4

Or see this region's nucleotide sequence