Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21030 and RR42_RS21035 are separated by 33 nucleotides RR42_RS21035 and RR42_RS21040 are separated by 67 nucleotides RR42_RS21040 and RR42_RS21045 are separated by 652 nucleotides
RR42_RS21030: RR42_RS21030 - hypothetical protein, at 45,479 to 45,658
_RS21030
RR42_RS21035: RR42_RS21035 - GntR family transcriptional regulator, at 45,692 to 46,408
_RS21035
RR42_RS21040: RR42_RS21040 - hypothetical protein, at 46,476 to 46,667
_RS21040
RR42_RS21045: RR42_RS21045 - cyanate hydratase, at 47,320 to 47,763
_RS21045
Position (kb) 46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 45.480 kb on + strand at 45.481 kb on - strand at 45.683 kb on + strand at 45.693 kb on + strand at 45.889 kb on - strand, within RR42_RS21035 at 46.156 kb on - strand, within RR42_RS21035 at 46.212 kb on + strand, within RR42_RS21035 at 46.212 kb on + strand, within RR42_RS21035 at 46.212 kb on + strand, within RR42_RS21035 at 46.244 kb on + strand, within RR42_RS21035 at 46.245 kb on - strand, within RR42_RS21035 at 46.363 kb on - strand at 46.633 kb on + strand, within RR42_RS21040 at 46.724 kb on - strand at 46.736 kb on - strand at 46.736 kb on - strand at 46.908 kb on - strand at 47.173 kb on + strand at 47.174 kb on - strand at 47.174 kb on - strand at 47.335 kb on - strand at 47.533 kb on + strand, within RR42_RS21045 at 47.533 kb on + strand, within RR42_RS21045 at 47.534 kb on - strand, within RR42_RS21045 at 47.534 kb on - strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 45,480 + +0.2 45,481 - -0.0 45,683 + -0.1 45,693 + +0.0 45,889 - RR42_RS21035 0.27 +0.7 46,156 - RR42_RS21035 0.65 -1.1 46,212 + RR42_RS21035 0.73 +1.7 46,212 + RR42_RS21035 0.73 +0.0 46,212 + RR42_RS21035 0.73 -0.3 46,244 + RR42_RS21035 0.77 -0.1 46,245 - RR42_RS21035 0.77 +0.3 46,363 - -0.1 46,633 + RR42_RS21040 0.82 -1.5 46,724 - -0.8 46,736 - +0.7 46,736 - -1.7 46,908 - -1.4 47,173 + +1.0 47,174 - +0.3 47,174 - +0.6 47,335 - -0.4 47,533 + RR42_RS21045 0.48 -1.8 47,533 + RR42_RS21045 0.48 -1.3 47,534 - RR42_RS21045 0.48 +0.6 47,534 - RR42_RS21045 0.48 -1.0 47,587 + RR42_RS21045 0.60 +0.8 47,587 + RR42_RS21045 0.60 -1.0 47,587 + RR42_RS21045 0.60 -2.1 47,587 + RR42_RS21045 0.60 -0.0 47,587 + RR42_RS21045 0.60 -0.3 47,588 - RR42_RS21045 0.60 -0.2 47,588 - RR42_RS21045 0.60 +0.4 47,588 - RR42_RS21045 0.60 +0.0 47,606 - RR42_RS21045 0.64 -0.1 47,606 - RR42_RS21045 0.64 -0.6 47,606 - RR42_RS21045 0.64 -0.8
Or see this region's nucleotide sequence