Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20690
Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,491,624 | - | RR42_RS20685 | 0.58 | +0.8 | |
4,491,996 | - | RR42_RS20685 | 0.88 | +0.7 | |
4,492,186 | - | +1.2 | |||
4,492,186 | - | -1.0 | |||
4,492,299 | - | +0.8 | |||
4,492,364 | + | +1.0 | |||
4,492,520 | + | +0.9 | |||
4,492,679 | + | RR42_RS20690 | 0.19 | +1.1 | |
4,492,679 | + | RR42_RS20690 | 0.19 | +1.1 | |
4,492,679 | + | RR42_RS20690 | 0.19 | -0.2 | |
4,492,934 | + | RR42_RS20690 | 0.48 | +1.0 | |
4,492,935 | - | RR42_RS20690 | 0.48 | +1.4 | |
4,492,935 | - | RR42_RS20690 | 0.48 | +0.1 | |
4,492,935 | - | RR42_RS20690 | 0.48 | +0.8 | |
4,492,964 | + | RR42_RS20690 | 0.51 | -0.1 | |
4,493,013 | - | RR42_RS20690 | 0.57 | +1.1 | |
4,493,106 | - | RR42_RS20690 | 0.67 | -3.1 | |
4,493,111 | + | RR42_RS20690 | 0.68 | +0.7 | |
4,493,112 | - | RR42_RS20690 | 0.68 | +0.6 | |
4,493,435 | + | +0.2 | |||
4,493,435 | + | +0.5 | |||
4,493,436 | - | +2.2 | |||
4,493,436 | - | +0.7 | |||
4,493,683 | + | -0.5 | |||
4,494,202 | + | RR42_RS20695 | 0.56 | +1.4 | |
4,494,203 | - | RR42_RS20695 | 0.56 | -0.5 | |
4,494,217 | + | RR42_RS20695 | 0.57 | +0.5 | |
4,494,217 | + | RR42_RS20695 | 0.57 | -0.5 | |
4,494,218 | - | RR42_RS20695 | 0.57 | +0.3 | |
4,494,240 | - | RR42_RS20695 | 0.60 | +1.6 | |
4,494,248 | - | RR42_RS20695 | 0.60 | +0.2 |
Or see this region's nucleotide sequence