Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20690

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20685 and RR42_RS20690 are separated by 357 nucleotidesRR42_RS20690 and RR42_RS20695 are separated by 284 nucleotides RR42_RS20685: RR42_RS20685 - lipoprotein, at 4,490,887 to 4,492,152 _RS20685 RR42_RS20690: RR42_RS20690 - membrane protein, at 4,492,510 to 4,493,397 _RS20690 RR42_RS20695: RR42_RS20695 - TetR family transcriptional regulator, at 4,493,682 to 4,494,617 _RS20695 Position (kb) 4492 4493 4494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4491.624 kb on - strand, within RR42_RS20685at 4491.996 kb on - strand, within RR42_RS20685at 4492.186 kb on - strandat 4492.186 kb on - strandat 4492.299 kb on - strandat 4492.364 kb on + strandat 4492.520 kb on + strandat 4492.679 kb on + strand, within RR42_RS20690at 4492.679 kb on + strand, within RR42_RS20690at 4492.679 kb on + strand, within RR42_RS20690at 4492.934 kb on + strand, within RR42_RS20690at 4492.935 kb on - strand, within RR42_RS20690at 4492.935 kb on - strand, within RR42_RS20690at 4492.935 kb on - strand, within RR42_RS20690at 4492.964 kb on + strand, within RR42_RS20690at 4493.013 kb on - strand, within RR42_RS20690at 4493.106 kb on - strand, within RR42_RS20690at 4493.111 kb on + strand, within RR42_RS20690at 4493.112 kb on - strand, within RR42_RS20690at 4493.435 kb on + strandat 4493.435 kb on + strandat 4493.436 kb on - strandat 4493.436 kb on - strandat 4493.683 kb on + strandat 4494.202 kb on + strand, within RR42_RS20695at 4494.203 kb on - strand, within RR42_RS20695at 4494.217 kb on + strand, within RR42_RS20695at 4494.217 kb on + strand, within RR42_RS20695at 4494.218 kb on - strand, within RR42_RS20695at 4494.240 kb on - strand, within RR42_RS20695at 4494.248 kb on - strand, within RR42_RS20695

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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4,491,624 - RR42_RS20685 0.58 +0.8
4,491,996 - RR42_RS20685 0.88 +0.7
4,492,186 - +1.2
4,492,186 - -1.0
4,492,299 - +0.8
4,492,364 + +1.0
4,492,520 + +0.9
4,492,679 + RR42_RS20690 0.19 +1.1
4,492,679 + RR42_RS20690 0.19 +1.1
4,492,679 + RR42_RS20690 0.19 -0.2
4,492,934 + RR42_RS20690 0.48 +1.0
4,492,935 - RR42_RS20690 0.48 +1.4
4,492,935 - RR42_RS20690 0.48 +0.1
4,492,935 - RR42_RS20690 0.48 +0.8
4,492,964 + RR42_RS20690 0.51 -0.1
4,493,013 - RR42_RS20690 0.57 +1.1
4,493,106 - RR42_RS20690 0.67 -3.1
4,493,111 + RR42_RS20690 0.68 +0.7
4,493,112 - RR42_RS20690 0.68 +0.6
4,493,435 + +0.2
4,493,435 + +0.5
4,493,436 - +2.2
4,493,436 - +0.7
4,493,683 + -0.5
4,494,202 + RR42_RS20695 0.56 +1.4
4,494,203 - RR42_RS20695 0.56 -0.5
4,494,217 + RR42_RS20695 0.57 +0.5
4,494,217 + RR42_RS20695 0.57 -0.5
4,494,218 - RR42_RS20695 0.57 +0.3
4,494,240 - RR42_RS20695 0.60 +1.6
4,494,248 - RR42_RS20695 0.60 +0.2

Or see this region's nucleotide sequence