Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20650 and RR42_RS20655 are separated by 1 nucleotides RR42_RS20655 and RR42_RS20660 are separated by 210 nucleotides RR42_RS20660 and RR42_RS20665 are separated by 163 nucleotides
RR42_RS20650: RR42_RS20650 - multidrug efflux RND transporter permease subunit, at 4,482,476 to 4,485,628
_RS20650
RR42_RS20655: RR42_RS20655 - multidrug transporter, at 4,485,630 to 4,487,105
_RS20655
RR42_RS20660: RR42_RS20660 - GNAT family acetyltransferase, at 4,487,316 to 4,487,774
_RS20660
RR42_RS20665: RR42_RS20665 - MBL fold metallo-hydrolase, at 4,487,938 to 4,488,669
_RS20665
Position (kb) 4485
4486
4487
4488 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4484.704 kb on + strand, within RR42_RS20650 at 4484.741 kb on + strand, within RR42_RS20650 at 4484.741 kb on + strand, within RR42_RS20650 at 4484.760 kb on - strand, within RR42_RS20650 at 4484.760 kb on - strand, within RR42_RS20650 at 4484.760 kb on - strand, within RR42_RS20650 at 4484.760 kb on - strand, within RR42_RS20650 at 4484.760 kb on - strand, within RR42_RS20650 at 4484.924 kb on + strand, within RR42_RS20650 at 4484.924 kb on + strand, within RR42_RS20650 at 4484.924 kb on + strand, within RR42_RS20650 at 4484.925 kb on - strand, within RR42_RS20650 at 4485.060 kb on - strand, within RR42_RS20650 at 4485.099 kb on - strand, within RR42_RS20650 at 4485.246 kb on - strand, within RR42_RS20650 at 4485.246 kb on - strand, within RR42_RS20650 at 4485.355 kb on + strand at 4485.355 kb on + strand at 4485.356 kb on - strand at 4485.356 kb on - strand at 4485.478 kb on + strand at 4485.699 kb on + strand at 4485.700 kb on - strand at 4486.017 kb on + strand, within RR42_RS20655 at 4486.018 kb on - strand, within RR42_RS20655 at 4486.030 kb on - strand, within RR42_RS20655 at 4486.117 kb on - strand, within RR42_RS20655 at 4486.117 kb on - strand, within RR42_RS20655 at 4486.183 kb on - strand, within RR42_RS20655 at 4486.183 kb on - strand, within RR42_RS20655 at 4486.183 kb on - strand, within RR42_RS20655 at 4486.183 kb on - strand, within RR42_RS20655 at 4486.183 kb on - strand, within RR42_RS20655 at 4486.212 kb on + strand, within RR42_RS20655 at 4486.562 kb on + strand, within RR42_RS20655 at 4486.770 kb on + strand, within RR42_RS20655 at 4486.771 kb on - strand, within RR42_RS20655 at 4487.026 kb on - strand at 4487.103 kb on + strand at 4487.103 kb on + strand at 4487.469 kb on + strand, within RR42_RS20660 at 4487.470 kb on - strand, within RR42_RS20660 at 4487.592 kb on + strand, within RR42_RS20660 at 4487.592 kb on + strand, within RR42_RS20660 at 4487.593 kb on - strand, within RR42_RS20660 at 4487.593 kb on - strand, within RR42_RS20660 at 4487.593 kb on - strand, within RR42_RS20660 at 4487.593 kb on - strand, within RR42_RS20660 at 4487.593 kb on - strand, within RR42_RS20660 at 4487.679 kb on + strand, within RR42_RS20660 at 4487.719 kb on - strand, within RR42_RS20660 at 4487.719 kb on - strand, within RR42_RS20660 at 4487.996 kb on - strand at 4488.056 kb on - strand, within RR42_RS20665
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 4,484,704 + RR42_RS20650 0.71 -0.5 4,484,741 + RR42_RS20650 0.72 -1.8 4,484,741 + RR42_RS20650 0.72 -2.9 4,484,760 - RR42_RS20650 0.72 -2.3 4,484,760 - RR42_RS20650 0.72 +0.0 4,484,760 - RR42_RS20650 0.72 -1.4 4,484,760 - RR42_RS20650 0.72 -2.7 4,484,760 - RR42_RS20650 0.72 -0.6 4,484,924 + RR42_RS20650 0.78 -1.0 4,484,924 + RR42_RS20650 0.78 +1.0 4,484,924 + RR42_RS20650 0.78 -0.9 4,484,925 - RR42_RS20650 0.78 -0.6 4,485,060 - RR42_RS20650 0.82 -2.1 4,485,099 - RR42_RS20650 0.83 -0.5 4,485,246 - RR42_RS20650 0.88 -1.4 4,485,246 - RR42_RS20650 0.88 +1.0 4,485,355 + -3.1 4,485,355 + -1.3 4,485,356 - -0.6 4,485,356 - -0.9 4,485,478 + -1.8 4,485,699 + -1.6 4,485,700 - -2.3 4,486,017 + RR42_RS20655 0.26 -1.6 4,486,018 - RR42_RS20655 0.26 -1.2 4,486,030 - RR42_RS20655 0.27 -1.6 4,486,117 - RR42_RS20655 0.33 -0.6 4,486,117 - RR42_RS20655 0.33 -3.1 4,486,183 - RR42_RS20655 0.37 +0.2 4,486,183 - RR42_RS20655 0.37 -1.2 4,486,183 - RR42_RS20655 0.37 -2.4 4,486,183 - RR42_RS20655 0.37 -2.1 4,486,183 - RR42_RS20655 0.37 -0.6 4,486,212 + RR42_RS20655 0.39 -1.3 4,486,562 + RR42_RS20655 0.63 +0.3 4,486,770 + RR42_RS20655 0.77 -0.9 4,486,771 - RR42_RS20655 0.77 -2.3 4,487,026 - +1.0 4,487,103 + -0.4 4,487,103 + -1.8 4,487,469 + RR42_RS20660 0.33 +0.1 4,487,470 - RR42_RS20660 0.34 +0.1 4,487,592 + RR42_RS20660 0.60 -0.2 4,487,592 + RR42_RS20660 0.60 +0.6 4,487,593 - RR42_RS20660 0.60 +0.4 4,487,593 - RR42_RS20660 0.60 +0.9 4,487,593 - RR42_RS20660 0.60 -0.2 4,487,593 - RR42_RS20660 0.60 -0.3 4,487,593 - RR42_RS20660 0.60 -0.3 4,487,679 + RR42_RS20660 0.79 +0.3 4,487,719 - RR42_RS20660 0.88 +0.4 4,487,719 - RR42_RS20660 0.88 +0.5 4,487,996 - -0.2 4,488,056 - RR42_RS20665 0.16 +0.4
Or see this region's nucleotide sequence