Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20530 and RR42_RS20535 are separated by 568 nucleotides RR42_RS20535 and RR42_RS20540 are separated by 141 nucleotides
RR42_RS20530: RR42_RS20530 - phosphoenolpyruvate carboxykinase, at 4,448,567 to 4,450,423
_RS20530
RR42_RS20535: RR42_RS20535 - 3-phosphoglycerate dehydrogenase, at 4,450,992 to 4,452,005
_RS20535
RR42_RS20540: RR42_RS20540 - MFS transporter, at 4,452,147 to 4,453,322
_RS20540
Position (kb) 4450
4451
4452
4453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4450.035 kb on + strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.279 kb on - strand at 4450.279 kb on - strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.383 kb on - strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.429 kb on + strand at 4450.429 kb on + strand at 4450.430 kb on - strand at 4450.430 kb on - strand at 4450.430 kb on - strand at 4450.442 kb on - strand at 4450.587 kb on + strand at 4450.587 kb on + strand at 4450.756 kb on + strand at 4450.757 kb on - strand at 4450.824 kb on - strand at 4450.824 kb on - strand at 4450.919 kb on + strand at 4450.919 kb on + strand at 4450.920 kb on - strand at 4450.920 kb on - strand at 4450.920 kb on - strand at 4450.925 kb on + strand at 4450.926 kb on - strand at 4450.926 kb on - strand at 4450.926 kb on - strand at 4450.927 kb on + strand at 4450.981 kb on + strand at 4450.981 kb on + strand at 4451.006 kb on - strand at 4451.016 kb on + strand at 4451.017 kb on - strand at 4451.148 kb on - strand, within RR42_RS20535 at 4451.255 kb on + strand, within RR42_RS20535 at 4451.256 kb on - strand, within RR42_RS20535 at 4451.256 kb on - strand, within RR42_RS20535 at 4451.358 kb on + strand, within RR42_RS20535 at 4451.358 kb on + strand, within RR42_RS20535 at 4451.359 kb on - strand, within RR42_RS20535 at 4451.359 kb on - strand, within RR42_RS20535 at 4451.858 kb on + strand, within RR42_RS20535 at 4451.858 kb on + strand, within RR42_RS20535 at 4451.859 kb on - strand, within RR42_RS20535 at 4451.880 kb on + strand, within RR42_RS20535 at 4451.881 kb on - strand, within RR42_RS20535 at 4451.898 kb on + strand, within RR42_RS20535 at 4451.898 kb on + strand, within RR42_RS20535 at 4451.899 kb on - strand, within RR42_RS20535 at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.908 kb on - strand at 4452.045 kb on + strand at 4452.046 kb on - strand at 4452.118 kb on + strand at 4452.119 kb on - strand at 4452.119 kb on - strand at 4452.328 kb on + strand, within RR42_RS20540 at 4452.328 kb on + strand, within RR42_RS20540 at 4452.328 kb on + strand, within RR42_RS20540 at 4452.329 kb on - strand, within RR42_RS20540 at 4452.329 kb on - strand, within RR42_RS20540 at 4452.379 kb on - strand, within RR42_RS20540 at 4452.379 kb on - strand, within RR42_RS20540 at 4452.379 kb on - strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.803 kb on + strand, within RR42_RS20540 at 4452.804 kb on - strand, within RR42_RS20540 at 4452.804 kb on - strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.808 kb on - strand, within RR42_RS20540 at 4452.808 kb on - strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 4,450,035 + RR42_RS20530 0.79 +0.6 4,450,036 - RR42_RS20530 0.79 -1.2 4,450,036 - RR42_RS20530 0.79 -0.3 4,450,036 - RR42_RS20530 0.79 +0.0 4,450,036 - RR42_RS20530 0.79 -2.4 4,450,036 - RR42_RS20530 0.79 -0.3 4,450,036 - RR42_RS20530 0.79 +0.7 4,450,036 - RR42_RS20530 0.79 -0.8 4,450,278 + +0.5 4,450,278 + +0.8 4,450,278 + +0.7 4,450,278 + +1.5 4,450,279 - +0.1 4,450,279 - -0.2 4,450,305 + -0.2 4,450,305 + +1.1 4,450,305 + +0.5 4,450,305 + +0.5 4,450,306 - +0.3 4,450,306 - +0.9 4,450,306 - +0.1 4,450,306 - +0.2 4,450,306 - +0.8 4,450,306 - +0.1 4,450,306 - +0.2 4,450,306 - -0.1 4,450,309 + +0.8 4,450,309 + +2.0 4,450,309 + +0.9 4,450,309 + +0.7 4,450,309 + +1.2 4,450,309 + +1.0 4,450,310 - -0.1 4,450,310 - +0.2 4,450,310 - +0.0 4,450,310 - +1.0 4,450,310 - +0.2 4,450,383 - -1.7 4,450,423 + +1.0 4,450,423 + +1.2 4,450,423 + +0.6 4,450,423 + +1.3 4,450,424 - -0.7 4,450,424 - +0.1 4,450,424 - +0.6 4,450,424 - -0.6 4,450,429 + +0.5 4,450,429 + +1.0 4,450,430 - +0.4 4,450,430 - -0.1 4,450,430 - +0.3 4,450,442 - -0.2 4,450,587 + +0.4 4,450,587 + -0.5 4,450,756 + +0.4 4,450,757 - -0.6 4,450,824 - -0.2 4,450,824 - -3.1 4,450,919 + +0.8 4,450,919 + +0.7 4,450,920 - -0.9 4,450,920 - -0.9 4,450,920 - -0.8 4,450,925 + +1.2 4,450,926 - +0.0 4,450,926 - -0.2 4,450,926 - -0.6 4,450,927 + +0.5 4,450,981 + +0.2 4,450,981 + +0.3 4,451,006 - -1.4 4,451,016 + +0.4 4,451,017 - +0.2 4,451,148 - RR42_RS20535 0.15 -1.5 4,451,255 + RR42_RS20535 0.26 -1.5 4,451,256 - RR42_RS20535 0.26 +0.2 4,451,256 - RR42_RS20535 0.26 -2.7 4,451,358 + RR42_RS20535 0.36 -0.2 4,451,358 + RR42_RS20535 0.36 -1.8 4,451,359 - RR42_RS20535 0.36 -1.1 4,451,359 - RR42_RS20535 0.36 -1.1 4,451,858 + RR42_RS20535 0.85 -1.3 4,451,858 + RR42_RS20535 0.85 -1.1 4,451,859 - RR42_RS20535 0.86 -1.3 4,451,880 + RR42_RS20535 0.88 -2.1 4,451,881 - RR42_RS20535 0.88 -1.2 4,451,898 + RR42_RS20535 0.89 -3.3 4,451,898 + RR42_RS20535 0.89 -0.0 4,451,899 - RR42_RS20535 0.89 -1.6 4,451,907 + -1.4 4,451,907 + -1.7 4,451,907 + -1.1 4,451,907 + -2.1 4,451,907 + -0.7 4,451,907 + +0.2 4,451,908 - -2.4 4,452,045 + -0.5 4,452,046 - -0.2 4,452,118 + -0.1 4,452,119 - +0.8 4,452,119 - +1.4 4,452,328 + RR42_RS20540 0.15 +0.4 4,452,328 + RR42_RS20540 0.15 +0.5 4,452,328 + RR42_RS20540 0.15 -0.3 4,452,329 - RR42_RS20540 0.15 -1.8 4,452,329 - RR42_RS20540 0.15 +0.8 4,452,379 - RR42_RS20540 0.20 -0.1 4,452,379 - RR42_RS20540 0.20 -1.0 4,452,379 - RR42_RS20540 0.20 -0.1 4,452,693 + RR42_RS20540 0.46 -0.7 4,452,693 + RR42_RS20540 0.46 +0.5 4,452,693 + RR42_RS20540 0.46 +0.2 4,452,693 + RR42_RS20540 0.46 -0.2 4,452,694 - RR42_RS20540 0.47 +0.3 4,452,694 - RR42_RS20540 0.47 +0.5 4,452,694 - RR42_RS20540 0.47 +2.4 4,452,694 - RR42_RS20540 0.47 -0.8 4,452,694 - RR42_RS20540 0.47 +1.1 4,452,694 - RR42_RS20540 0.47 -1.4 4,452,803 + RR42_RS20540 0.56 -0.1 4,452,804 - RR42_RS20540 0.56 -0.3 4,452,804 - RR42_RS20540 0.56 -0.8 4,452,807 + RR42_RS20540 0.56 +0.1 4,452,807 + RR42_RS20540 0.56 +0.4 4,452,807 + RR42_RS20540 0.56 -0.7 4,452,807 + RR42_RS20540 0.56 -1.0 4,452,808 - RR42_RS20540 0.56 +0.5 4,452,808 - RR42_RS20540 0.56 +0.1 4,452,809 + RR42_RS20540 0.56 -1.9 4,452,809 + RR42_RS20540 0.56 -0.1 4,452,809 + RR42_RS20540 0.56 +0.8 4,452,809 + RR42_RS20540 0.56 -0.1 4,452,809 + RR42_RS20540 0.56 -0.1 4,452,809 + RR42_RS20540 0.56 +3.7 4,452,810 - RR42_RS20540 0.56 +0.1 4,452,810 - RR42_RS20540 0.56 +0.3 4,452,810 - RR42_RS20540 0.56 +0.8 4,452,810 - RR42_RS20540 0.56 +0.4 4,452,810 - RR42_RS20540 0.56 +0.1 4,452,810 - RR42_RS20540 0.56 -0.2 4,452,810 - RR42_RS20540 0.56 -0.8 4,452,810 - RR42_RS20540 0.56 -0.1 4,452,810 - RR42_RS20540 0.56 -0.2 4,452,810 - RR42_RS20540 0.56 -0.5 4,452,810 - RR42_RS20540 0.56 -0.4
Or see this region's nucleotide sequence