Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19895 and RR42_RS19900 are separated by 533 nucleotides RR42_RS19900 and RR42_RS19905 are separated by 100 nucleotides RR42_RS19905 and RR42_RS19910 are separated by 184 nucleotides
RR42_RS19895: RR42_RS19895 - elongation factor GreAB, at 4,297,646 to 4,298,065
_RS19895
RR42_RS19900: RR42_RS19900 - MerR family transcriptional regulator, at 4,298,599 to 4,299,039
_RS19900
RR42_RS19905: RR42_RS19905 - S-adenosylmethionine decarboxylase, at 4,299,140 to 4,299,517
_RS19905
RR42_RS19910: RR42_RS19910 - membrane protein, at 4,299,702 to 4,301,222
_RS19910
Position (kb) 4298
4299
4300 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4297.647 kb on + strand at 4297.647 kb on + strand at 4297.648 kb on - strand at 4297.648 kb on - strand at 4297.648 kb on - strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.649 kb on + strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.650 kb on - strand at 4297.656 kb on + strand at 4297.656 kb on + strand at 4297.656 kb on + strand at 4297.656 kb on + strand at 4297.657 kb on - strand at 4297.657 kb on - strand at 4297.732 kb on - strand, within RR42_RS19895 at 4298.031 kb on + strand at 4298.079 kb on + strand at 4298.079 kb on + strand at 4298.080 kb on - strand at 4298.080 kb on - strand at 4298.080 kb on - strand at 4298.283 kb on + strand at 4298.549 kb on + strand at 4298.561 kb on - strand at 4298.561 kb on - strand at 4298.561 kb on - strand at 4298.561 kb on - strand at 4298.565 kb on + strand at 4298.600 kb on + strand at 4298.600 kb on + strand at 4298.600 kb on + strand at 4298.710 kb on - strand, within RR42_RS19900 at 4299.094 kb on + strand at 4299.106 kb on + strand at 4299.107 kb on - strand at 4299.178 kb on + strand, within RR42_RS19905 at 4299.178 kb on + strand, within RR42_RS19905 at 4299.179 kb on - strand, within RR42_RS19905 at 4299.179 kb on - strand, within RR42_RS19905 at 4299.179 kb on - strand, within RR42_RS19905 at 4299.273 kb on + strand, within RR42_RS19905 at 4299.286 kb on + strand, within RR42_RS19905 at 4299.287 kb on - strand, within RR42_RS19905 at 4299.299 kb on - strand, within RR42_RS19905 at 4299.299 kb on - strand, within RR42_RS19905 at 4299.403 kb on - strand, within RR42_RS19905 at 4299.682 kb on + strand at 4299.682 kb on + strand at 4299.682 kb on + strand at 4299.682 kb on + strand at 4299.683 kb on - strand at 4299.835 kb on + strand at 4299.835 kb on + strand at 4299.876 kb on - strand, within RR42_RS19910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 4,297,647 + -0.7 4,297,647 + -0.0 4,297,648 - -1.2 4,297,648 - -0.3 4,297,648 - -0.9 4,297,649 + -0.2 4,297,649 + +0.0 4,297,649 + -2.2 4,297,649 + -0.6 4,297,649 + +0.4 4,297,650 - -0.8 4,297,650 - -0.0 4,297,650 - -0.2 4,297,650 - -0.0 4,297,650 - -0.8 4,297,650 - +0.8 4,297,650 - -0.2 4,297,650 - +0.2 4,297,650 - -0.9 4,297,656 + +0.8 4,297,656 + -1.4 4,297,656 + -0.4 4,297,656 + +2.4 4,297,657 - -0.6 4,297,657 - +0.9 4,297,732 - RR42_RS19895 0.20 +0.1 4,298,031 + -0.1 4,298,079 + +0.2 4,298,079 + -1.9 4,298,080 - -1.1 4,298,080 - -0.6 4,298,080 - +0.8 4,298,283 + +2.0 4,298,549 + -1.5 4,298,561 - -0.1 4,298,561 - +0.1 4,298,561 - -0.7 4,298,561 - -0.4 4,298,565 + -0.6 4,298,600 + +0.0 4,298,600 + -1.9 4,298,600 + +0.6 4,298,710 - RR42_RS19900 0.25 -0.9 4,299,094 + -1.4 4,299,106 + +0.7 4,299,107 - -0.1 4,299,178 + RR42_RS19905 0.10 +2.0 4,299,178 + RR42_RS19905 0.10 +0.3 4,299,179 - RR42_RS19905 0.10 -0.2 4,299,179 - RR42_RS19905 0.10 +0.5 4,299,179 - RR42_RS19905 0.10 +0.4 4,299,273 + RR42_RS19905 0.35 +0.2 4,299,286 + RR42_RS19905 0.39 -0.5 4,299,287 - RR42_RS19905 0.39 +0.7 4,299,299 - RR42_RS19905 0.42 -0.4 4,299,299 - RR42_RS19905 0.42 +0.4 4,299,403 - RR42_RS19905 0.70 -1.3 4,299,682 + -1.3 4,299,682 + +0.1 4,299,682 + -0.2 4,299,682 + +0.1 4,299,683 - -0.4 4,299,835 + -1.0 4,299,835 + -0.2 4,299,876 - RR42_RS19910 0.11 -0.2
Or see this region's nucleotide sequence