Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19640 and RR42_RS19645 are separated by 864 nucleotides RR42_RS19645 and RR42_RS19650 are separated by 76 nucleotides
RR42_RS19640: RR42_RS19640 - hypothetical protein, at 4,245,133 to 4,246,122
_RS19640
RR42_RS19645: RR42_RS19645 - DNA topoisomerase, at 4,246,987 to 4,247,322
_RS19645
RR42_RS19650: RR42_RS19650 - sulfate transporter, at 4,247,399 to 4,247,836
_RS19650
Position (kb) 4246
4247
4248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4245.995 kb on + strand, within RR42_RS19640 at 4246.056 kb on + strand at 4246.057 kb on - strand at 4246.057 kb on - strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.069 kb on + strand at 4246.070 kb on - strand at 4246.070 kb on - strand at 4246.070 kb on - strand at 4246.073 kb on + strand at 4246.074 kb on - strand at 4246.074 kb on - strand at 4246.099 kb on - strand at 4246.197 kb on + strand at 4246.198 kb on - strand at 4246.207 kb on - strand at 4246.207 kb on - strand at 4246.229 kb on + strand at 4246.230 kb on - strand at 4246.230 kb on - strand at 4246.312 kb on + strand at 4246.312 kb on + strand at 4246.331 kb on + strand at 4246.332 kb on - strand at 4246.405 kb on + strand at 4246.405 kb on + strand at 4246.406 kb on - strand at 4246.442 kb on - strand at 4246.442 kb on - strand at 4246.483 kb on - strand at 4246.489 kb on - strand at 4246.489 kb on - strand at 4246.549 kb on + strand at 4246.549 kb on + strand at 4246.549 kb on + strand at 4246.549 kb on + strand at 4246.550 kb on - strand at 4246.550 kb on - strand at 4246.550 kb on - strand at 4246.556 kb on - strand at 4246.612 kb on + strand at 4246.667 kb on + strand at 4246.668 kb on - strand at 4246.722 kb on + strand at 4246.723 kb on - strand at 4246.723 kb on - strand at 4246.723 kb on - strand at 4246.782 kb on + strand at 4246.782 kb on + strand at 4246.782 kb on + strand at 4246.782 kb on + strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.783 kb on - strand at 4246.784 kb on + strand at 4246.784 kb on + strand at 4246.784 kb on + strand at 4246.785 kb on - strand at 4246.785 kb on - strand at 4246.785 kb on - strand at 4246.871 kb on + strand at 4246.872 kb on - strand at 4246.877 kb on + strand at 4246.877 kb on + strand at 4246.878 kb on - strand at 4246.878 kb on - strand at 4246.905 kb on + strand at 4246.937 kb on - strand at 4247.225 kb on + strand, within RR42_RS19645 at 4247.225 kb on + strand, within RR42_RS19645 at 4247.226 kb on - strand, within RR42_RS19645 at 4247.226 kb on - strand, within RR42_RS19645 at 4247.348 kb on - strand at 4247.352 kb on - strand at 4247.367 kb on + strand at 4247.367 kb on + strand at 4247.367 kb on + strand at 4247.368 kb on - strand at 4247.368 kb on - strand at 4247.368 kb on - strand at 4247.368 kb on - strand at 4247.406 kb on + strand at 4247.550 kb on + strand, within RR42_RS19650 at 4247.551 kb on - strand, within RR42_RS19650 at 4247.551 kb on - strand, within RR42_RS19650 at 4247.551 kb on - strand, within RR42_RS19650 at 4247.616 kb on - strand, within RR42_RS19650 at 4247.644 kb on + strand, within RR42_RS19650 at 4247.686 kb on + strand, within RR42_RS19650 at 4247.686 kb on + strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.687 kb on - strand, within RR42_RS19650 at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.836 kb on + strand at 4247.836 kb on + strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.855 kb on - strand at 4247.855 kb on - strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.957 kb on - strand at 4247.957 kb on - strand at 4247.981 kb on + strand at 4247.981 kb on + strand at 4247.982 kb on - strand at 4247.999 kb on + strand at 4248.099 kb on - strand at 4248.099 kb on - strand at 4248.126 kb on - strand at 4248.126 kb on - strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.265 kb on - strand at 4248.265 kb on - strand at 4248.265 kb on - strand at 4248.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 4,245,995 + RR42_RS19640 0.87 -0.4 4,246,056 + +0.6 4,246,057 - +0.4 4,246,057 - +1.4 4,246,069 + +2.2 4,246,069 + +0.3 4,246,069 + -0.2 4,246,069 + +1.6 4,246,069 + +0.7 4,246,070 - +0.8 4,246,070 - +0.5 4,246,070 - -0.1 4,246,073 + +0.5 4,246,074 - +0.1 4,246,074 - +0.5 4,246,099 - -1.1 4,246,197 + +0.6 4,246,198 - +1.2 4,246,207 - +0.1 4,246,207 - -1.2 4,246,229 + +0.0 4,246,230 - -0.3 4,246,230 - -0.5 4,246,312 + -2.1 4,246,312 + +0.5 4,246,331 + -0.7 4,246,332 - -0.1 4,246,405 + -0.9 4,246,405 + -0.1 4,246,406 - -0.4 4,246,442 - -0.2 4,246,442 - +1.4 4,246,483 - +0.1 4,246,489 - -0.5 4,246,489 - -2.3 4,246,549 + +0.2 4,246,549 + +0.7 4,246,549 + -0.7 4,246,549 + +0.1 4,246,550 - -0.9 4,246,550 - -1.0 4,246,550 - -1.7 4,246,556 - -0.6 4,246,612 + -2.2 4,246,667 + -0.1 4,246,668 - +0.9 4,246,722 + -0.8 4,246,723 - -0.2 4,246,723 - -2.1 4,246,723 - +1.2 4,246,782 + +0.4 4,246,782 + +0.1 4,246,782 + -0.9 4,246,782 + -0.9 4,246,783 - -0.3 4,246,783 - -0.8 4,246,783 - -2.3 4,246,783 - +1.1 4,246,783 - -1.6 4,246,783 - +1.1 4,246,784 + -0.4 4,246,784 + -0.4 4,246,784 + -1.3 4,246,785 - -1.6 4,246,785 - -0.7 4,246,785 - +1.1 4,246,871 + -0.6 4,246,872 - +0.2 4,246,877 + +0.3 4,246,877 + -0.9 4,246,878 - +0.6 4,246,878 - -0.3 4,246,905 + +0.0 4,246,937 - -0.6 4,247,225 + RR42_RS19645 0.71 +0.7 4,247,225 + RR42_RS19645 0.71 +0.9 4,247,226 - RR42_RS19645 0.71 +1.6 4,247,226 - RR42_RS19645 0.71 -0.6 4,247,348 - +0.3 4,247,352 - +0.2 4,247,367 + -2.4 4,247,367 + -0.2 4,247,367 + +2.0 4,247,368 - +0.4 4,247,368 - +0.1 4,247,368 - -0.2 4,247,368 - -0.7 4,247,406 + -1.4 4,247,550 + RR42_RS19650 0.34 +0.3 4,247,551 - RR42_RS19650 0.35 +0.3 4,247,551 - RR42_RS19650 0.35 +1.0 4,247,551 - RR42_RS19650 0.35 -0.6 4,247,616 - RR42_RS19650 0.50 -0.8 4,247,644 + RR42_RS19650 0.56 -0.2 4,247,686 + RR42_RS19650 0.66 +0.3 4,247,686 + RR42_RS19650 0.66 -0.7 4,247,687 - RR42_RS19650 0.66 -0.4 4,247,687 - RR42_RS19650 0.66 +0.2 4,247,687 - RR42_RS19650 0.66 +0.4 4,247,687 - RR42_RS19650 0.66 +0.1 4,247,824 + +0.6 4,247,824 + -0.3 4,247,824 + -0.6 4,247,824 + -1.1 4,247,824 + -1.2 4,247,825 - -0.8 4,247,825 - -0.1 4,247,825 - -1.6 4,247,825 - -0.1 4,247,825 - +0.6 4,247,825 - +0.1 4,247,825 - -1.6 4,247,825 - -0.6 4,247,825 - -1.2 4,247,825 - +0.3 4,247,825 - -2.7 4,247,825 - +0.4 4,247,836 + -0.2 4,247,836 + -1.6 4,247,837 - +0.1 4,247,837 - -0.0 4,247,837 - -0.3 4,247,837 - -0.4 4,247,854 + +0.8 4,247,854 + +0.2 4,247,854 + +0.7 4,247,854 + +0.2 4,247,855 - +0.2 4,247,855 - +0.8 4,247,927 + -0.2 4,247,927 + +0.3 4,247,927 + -0.4 4,247,927 + +1.4 4,247,927 + -1.1 4,247,927 + -0.1 4,247,928 - +0.4 4,247,928 - -1.0 4,247,928 - -1.5 4,247,928 - -0.2 4,247,928 - -0.0 4,247,928 - -0.6 4,247,928 - +0.5 4,247,928 - -0.6 4,247,928 - +1.4 4,247,957 - -0.2 4,247,957 - -0.8 4,247,981 + +1.0 4,247,981 + +0.2 4,247,982 - +0.8 4,247,999 + +1.2 4,248,099 - -0.0 4,248,099 - +0.3 4,248,126 - -0.5 4,248,126 - -0.0 4,248,264 + -1.4 4,248,264 + +0.6 4,248,264 + -0.6 4,248,264 + +0.8 4,248,265 - +1.1 4,248,265 - -1.6 4,248,265 - -0.3 4,248,298 + -0.4
Or see this region's nucleotide sequence