Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19500

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
4,208,463	-		RR42_RS19490	0.62	+0.2
4,208,463	-		RR42_RS19490	0.62	-0.6
4,208,463	-		RR42_RS19490	0.62	-1.7
4,208,612	+				-0.5
4,208,622	-				-2.5
4,208,630	+				-1.4
4,208,630	+				-0.5
4,208,630	+				+0.2
4,208,630	+				+0.4
4,208,630	+				+0.4
4,208,631	-				-2.8
4,208,631	-				-3.4
4,208,812	+		RR42_RS19495	0.22	-0.6
4,208,812	+		RR42_RS19495	0.22	-0.6
4,208,813	-		RR42_RS19495	0.22	-1.4
4,208,813	-		RR42_RS19495	0.22	-0.3
4,208,813	-		RR42_RS19495	0.22	-1.1
4,208,813	-		RR42_RS19495	0.22	-1.3
4,208,814	+		RR42_RS19495	0.22	+1.4
4,208,814	+		RR42_RS19495	0.22	+0.5
4,208,815	-		RR42_RS19495	0.22	-1.2
4,208,815	-		RR42_RS19495	0.22	-0.2
4,208,815	-		RR42_RS19495	0.22	-0.4
4,208,958	+		RR42_RS19495	0.44	-1.7
4,209,331	+				-1.8
4,209,331	+				-0.9
4,209,459	+		RR42_RS19500	0.10	-1.1
4,209,459	+		RR42_RS19500	0.10	-1.2
4,209,862	-		RR42_RS19500	0.51	-1.5
4,210,195	-		RR42_RS19500	0.84	-0.7
4,210,195	-		RR42_RS19500	0.84	-0.4
4,210,205	+		RR42_RS19500	0.85	-2.8
4,210,206	-		RR42_RS19500	0.85	-0.7
4,210,206	-		RR42_RS19500	0.85	-1.4
4,210,206	-		RR42_RS19500	0.85	-1.0
4,210,217	+		RR42_RS19500	0.86	-0.7
4,210,218	-		RR42_RS19500	0.87	-1.2
4,210,218	-		RR42_RS19500	0.87	-3.4
4,210,269	-				-0.6
4,210,440	+				-0.6
4,210,440	+				+0.5
4,210,440	+				+0.5
4,210,440	+				+0.0
4,210,440	+				-0.1
4,210,440	+				+0.7
4,210,440	+				-0.7
4,210,441	-				+0.1
4,210,441	-				-0.3
4,210,441	-				+0.6
4,210,441	-				-0.9
4,210,441	-				+0.2
4,210,536	+				-0.2
4,210,536	+				+1.4
4,210,537	-				-1.4
4,210,537	-				-0.1
4,210,537	-				-1.4
4,210,537	-				-1.8
4,210,537	-				-1.2
4,210,540	+				-0.6
4,210,540	+				-0.9
4,210,540	+				+0.1
4,210,540	+				+0.5
4,210,540	+				-0.3
4,210,541	-				-1.5
4,210,541	-				+0.1
4,210,541	-				-0.3
4,210,541	-				+1.4
4,210,541	-				-2.3
4,210,541	-				-0.4
4,210,541	-				+0.4
4,210,541	-				-2.4
4,210,541	-				-1.4
4,210,541	-				-1.8
4,210,541	-				-0.6
4,210,570	+				-0.9
4,210,570	+				-0.2
4,210,570	+				+0.7
4,210,570	+				+0.0
4,210,571	-				-1.5
4,210,571	-				-0.1
4,210,571	-				-2.2
4,210,639	+				+0.0
4,210,731	+				-0.4
4,210,732	-				-2.0
4,210,740	+				-0.8
4,210,740	+				+0.7
4,210,740	+				-1.4
4,210,740	+				-1.4
4,210,741	-				-2.0
4,210,759	+				-3.3
4,210,759	+				-0.4
4,210,760	-				-1.0
4,210,760	-				-1.5
4,210,854	+				-2.4
4,211,073	+		RR42_RS19505	0.23	-2.1