Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19485

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
4,206,819	+		RR42_RS19475	0.87	-1.4
4,206,819	+		RR42_RS19475	0.87	-1.2
4,206,922	+				+0.5
4,206,922	+				-0.4
4,206,922	+				-0.9
4,206,922	+				-0.8
4,206,922	+				-1.9
4,206,944	-				+0.5
4,206,944	-				+0.3
4,206,944	-				+0.4
4,207,093	+				-0.3
4,207,094	-				-0.2
4,207,095	+				-0.9
4,207,095	+				-0.1
4,207,095	+				+0.2
4,207,096	-				-2.2
4,207,096	-				-1.7
4,207,140	-				-1.4
4,207,141	+				+0.1
4,207,141	+				-1.0
4,207,141	+				+0.3
4,207,141	+				-0.0
4,207,141	+				+0.0
4,207,141	+				-0.3
4,207,141	+				-1.8
4,207,142	-				-2.0
4,207,142	-				-0.6
4,207,142	-				-1.6
4,207,162	-				-2.0
4,207,168	+				-1.1
4,207,344	-		RR42_RS19480	0.35	-0.5
4,207,395	+		RR42_RS19480	0.46	-1.6
4,207,395	+		RR42_RS19480	0.46	-1.2
4,207,481	+		RR42_RS19480	0.64	+0.0
4,207,482	-		RR42_RS19480	0.64	-1.8
4,207,482	-		RR42_RS19480	0.64	-1.7
4,207,500	+		RR42_RS19480	0.68	-0.6
4,207,501	-		RR42_RS19480	0.68	-1.0
4,207,539	+		RR42_RS19480	0.76	+0.7
4,207,540	-		RR42_RS19480	0.76	-0.5
4,207,540	-		RR42_RS19480	0.76	-1.2
4,207,545	+		RR42_RS19480	0.78	-1.3
4,207,546	-		RR42_RS19480	0.78	-0.3
4,207,546	-		RR42_RS19480	0.78	-2.1
4,207,546	-		RR42_RS19480	0.78	-1.2
4,207,647	+				+0.4
4,207,647	+				-0.4
4,207,647	+				-0.1
4,207,796	-		RR42_RS19485	0.22	-2.0
4,208,160	+				-0.3
4,208,161	-				+0.0
4,208,212	+				+0.1
4,208,212	+				-0.7
4,208,213	-				-0.1
4,208,463	-		RR42_RS19490	0.62	+0.2
4,208,463	-		RR42_RS19490	0.62	-0.6
4,208,463	-		RR42_RS19490	0.62	-1.7
4,208,612	+				-0.5
4,208,622	-				-2.5
4,208,630	+				-1.4
4,208,630	+				-0.5
4,208,630	+				+0.2
4,208,630	+				+0.4
4,208,630	+				+0.4
4,208,631	-				-2.8
4,208,631	-				-3.4
4,208,812	+		RR42_RS19495	0.22	-0.6
4,208,812	+		RR42_RS19495	0.22	-0.6
4,208,813	-		RR42_RS19495	0.22	-1.4
4,208,813	-		RR42_RS19495	0.22	-0.3
4,208,813	-		RR42_RS19495	0.22	-1.1
4,208,813	-		RR42_RS19495	0.22	-1.3
4,208,814	+		RR42_RS19495	0.22	+1.4
4,208,814	+		RR42_RS19495	0.22	+0.5
4,208,815	-		RR42_RS19495	0.22	-1.2
4,208,815	-		RR42_RS19495	0.22	-0.2
4,208,815	-		RR42_RS19495	0.22	-0.4
4,208,958	+		RR42_RS19495	0.44	-1.7