Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19045

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19040 and RR42_RS19045 are separated by 82 nucleotidesRR42_RS19045 and RR42_RS19050 are separated by 420 nucleotides RR42_RS19040: RR42_RS19040 - penicillin-binding protein, at 4,124,407 to 4,126,779 _RS19040 RR42_RS19045: RR42_RS19045 - frataxin, at 4,126,862 to 4,127,197 _RS19045 RR42_RS19050: RR42_RS19050 - diaminopimelate decarboxylase, at 4,127,618 to 4,128,886 _RS19050 Position (kb) 4126 4127 4128Strain fitness (log2 ratio) -1 0 1at 4126.911 kb on - strand, within RR42_RS19045at 4127.230 kb on + strandat 4127.240 kb on + strandat 4127.260 kb on + strandat 4127.260 kb on + strandat 4127.351 kb on + strandat 4127.351 kb on + strandat 4127.491 kb on + strandat 4127.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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4,126,911 - RR42_RS19045 0.15 -1.2
4,127,230 + -1.0
4,127,240 + -0.0
4,127,260 + -0.1
4,127,260 + +0.4
4,127,351 + -0.1
4,127,351 + +0.0
4,127,491 + +0.1
4,127,613 + -0.8

Or see this region's nucleotide sequence