Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18925 and RR42_RS18930 are separated by 210 nucleotides RR42_RS18930 and RR42_RS18935 are separated by 81 nucleotides RR42_RS18935 and RR42_RS18940 overlap by 4 nucleotides
RR42_RS18925: RR42_RS18925 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,097,950 to 4,099,200
_RS18925
RR42_RS18930: RR42_RS18930 - BolA family transcriptional regulator, at 4,099,411 to 4,099,668
_RS18930
RR42_RS18935: RR42_RS18935 - metal-dependent hydrolase, at 4,099,750 to 4,100,580
_RS18935
RR42_RS18940: RR42_RS18940 - ABC transporter ATP-binding protein, at 4,100,577 to 4,101,530
_RS18940
Position (kb)
4099
4100 Strain fitness (log2 ratio)
-1
0
1
2 at 4099.048 kb on - strand, within RR42_RS18925 at 4099.048 kb on - strand, within RR42_RS18925 at 4099.052 kb on - strand, within RR42_RS18925 at 4099.052 kb on - strand, within RR42_RS18925 at 4099.052 kb on - strand, within RR42_RS18925 at 4099.052 kb on - strand, within RR42_RS18925 at 4099.052 kb on - strand, within RR42_RS18925 at 4099.052 kb on - strand, within RR42_RS18925 at 4099.408 kb on - strand at 4099.515 kb on - strand, within RR42_RS18930 at 4099.515 kb on - strand, within RR42_RS18930 at 4099.515 kb on - strand, within RR42_RS18930 at 4099.638 kb on - strand, within RR42_RS18930 at 4099.638 kb on - strand, within RR42_RS18930 at 4099.669 kb on - strand at 4099.669 kb on - strand at 4099.669 kb on - strand at 4099.669 kb on - strand at 4099.713 kb on - strand at 4099.713 kb on - strand at 4099.745 kb on - strand at 4099.745 kb on - strand at 4099.896 kb on - strand, within RR42_RS18935 at 4100.093 kb on - strand, within RR42_RS18935 at 4100.093 kb on - strand, within RR42_RS18935 at 4100.093 kb on - strand, within RR42_RS18935 at 4100.196 kb on - strand, within RR42_RS18935 at 4100.196 kb on - strand, within RR42_RS18935 at 4100.196 kb on - strand, within RR42_RS18935 at 4100.196 kb on - strand, within RR42_RS18935 at 4100.196 kb on - strand, within RR42_RS18935 at 4100.347 kb on - strand, within RR42_RS18935 at 4100.349 kb on - strand, within RR42_RS18935 at 4100.349 kb on - strand, within RR42_RS18935 at 4100.349 kb on - strand, within RR42_RS18935 at 4100.349 kb on - strand, within RR42_RS18935 at 4100.349 kb on - strand, within RR42_RS18935 at 4100.364 kb on - strand, within RR42_RS18935 at 4100.409 kb on - strand, within RR42_RS18935 at 4100.481 kb on - strand, within RR42_RS18935 at 4100.501 kb on - strand at 4100.501 kb on - strand at 4100.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 4,099,048 - RR42_RS18925 0.88 -0.3 4,099,048 - RR42_RS18925 0.88 +2.3 4,099,052 - RR42_RS18925 0.88 +0.0 4,099,052 - RR42_RS18925 0.88 +0.3 4,099,052 - RR42_RS18925 0.88 +0.7 4,099,052 - RR42_RS18925 0.88 +0.1 4,099,052 - RR42_RS18925 0.88 +0.3 4,099,052 - RR42_RS18925 0.88 +0.7 4,099,408 - +1.2 4,099,515 - RR42_RS18930 0.40 +0.2 4,099,515 - RR42_RS18930 0.40 +0.0 4,099,515 - RR42_RS18930 0.40 +1.3 4,099,638 - RR42_RS18930 0.88 +0.9 4,099,638 - RR42_RS18930 0.88 +0.5 4,099,669 - +0.2 4,099,669 - -0.7 4,099,669 - -0.2 4,099,669 - +0.3 4,099,713 - +1.6 4,099,713 - +0.3 4,099,745 - +0.8 4,099,745 - +0.4 4,099,896 - RR42_RS18935 0.18 +0.9 4,100,093 - RR42_RS18935 0.41 -0.2 4,100,093 - RR42_RS18935 0.41 -0.4 4,100,093 - RR42_RS18935 0.41 +1.4 4,100,196 - RR42_RS18935 0.54 +0.3 4,100,196 - RR42_RS18935 0.54 -0.8 4,100,196 - RR42_RS18935 0.54 -0.6 4,100,196 - RR42_RS18935 0.54 -0.1 4,100,196 - RR42_RS18935 0.54 +0.3 4,100,347 - RR42_RS18935 0.72 +1.3 4,100,349 - RR42_RS18935 0.72 +0.2 4,100,349 - RR42_RS18935 0.72 +1.1 4,100,349 - RR42_RS18935 0.72 +0.3 4,100,349 - RR42_RS18935 0.72 -1.0 4,100,349 - RR42_RS18935 0.72 -1.1 4,100,364 - RR42_RS18935 0.74 +0.5 4,100,409 - RR42_RS18935 0.79 +0.6 4,100,481 - RR42_RS18935 0.88 +0.1 4,100,501 - +0.6 4,100,501 - +0.0 4,100,622 - +0.2
Or see this region's nucleotide sequence