Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18420

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
3,989,676	+				-0.6
3,989,810	+				-0.5
3,989,810	+				+0.9
3,989,810	+				+0.5
3,989,810	+				-0.2
3,989,810	+				+0.9
3,989,811	-				-0.7
3,989,811	-				+0.4
3,989,816	+				+0.7
3,989,816	+				+0.3
3,989,816	+				+0.6
3,989,816	+				-0.2
3,989,816	+				-1.2
3,989,816	+				-0.2
3,989,817	-				+0.2
3,989,817	-				+1.7
3,989,817	-				+0.2
3,989,817	-				+0.6
3,989,817	-				+1.5
3,989,820	+				-0.7
3,989,820	+				-0.7
3,989,820	+				-0.2
3,989,821	-				+0.1
3,989,821	-				-0.4
3,989,824	-				+0.2
3,989,890	-				-1.9
3,989,924	-				+0.2
3,989,957	+				-0.4
3,989,958	-				+0.3
3,989,983	+				+0.7
3,989,983	+				+0.5
3,989,983	+				+0.4
3,989,984	-				-0.7
3,989,984	-				-2.4
3,989,984	-				+0.4
3,990,001	+				-0.3
3,990,020	+				+0.1
3,990,020	+				+1.6
3,990,021	-				-0.3
3,990,025	+				-0.3
3,990,025	-				-0.0
3,990,026	-				+0.3
3,990,026	-				+0.3
3,990,064	+				-0.2
3,990,136	+				+0.1
3,990,186	+				+0.3
3,990,186	+				+0.3
3,990,187	-				+0.5
3,990,187	-				+1.6
3,990,187	-				-0.2
3,990,187	-				-0.5
3,990,187	-				+0.6
3,990,187	-				+0.5
3,990,190	-				+0.4
3,990,196	+				-0.6
3,990,197	-				-1.0
3,990,291	+				-0.5
3,990,291	+				-1.9
3,990,291	+				+0.6
3,990,292	-				+0.4
3,990,292	-				+2.9
3,990,292	-				-0.5
3,990,395	-				+1.0
3,990,395	-				-1.0
3,990,532	-				-2.4
3,990,553	-				-0.6
3,990,600	+				-2.6
3,990,603	+				-3.5
3,990,603	+				+0.7
3,990,604	-				-1.7
3,990,604	-				-1.7
3,990,630	+				-2.6
3,990,630	+				-3.2
3,990,631	-				-1.5
3,990,636	+				+0.3
3,990,636	+				-2.9
3,990,636	+				-1.4
3,990,646	+				-1.0
3,990,787	+		RR42_RS18420	0.32	-2.5
3,990,860	-		RR42_RS18420	0.45	-3.8
3,990,894	+		RR42_RS18420	0.51	-4.5
3,990,928	+		RR42_RS18420	0.57	-2.6
3,990,928	+		RR42_RS18420	0.57	-2.5
3,990,929	-		RR42_RS18420	0.57	-2.6
3,990,946	+		RR42_RS18420	0.60	-1.2
3,990,967	+		RR42_RS18420	0.64	-1.6
3,990,968	-		RR42_RS18420	0.64	-0.9
3,990,991	+		RR42_RS18420	0.68	-1.4
3,990,991	+		RR42_RS18420	0.68	-3.5
3,990,991	+		RR42_RS18420	0.68	-3.2
3,991,011	+		RR42_RS18420	0.72	-3.2
3,991,011	+		RR42_RS18420	0.72	-0.5
3,991,012	-		RR42_RS18420	0.72	-1.5
3,991,029	+		RR42_RS18420	0.75	+0.3
3,991,029	+		RR42_RS18420	0.75	-3.9
3,991,031	+		RR42_RS18420	0.75	-3.4
3,991,031	+		RR42_RS18420	0.75	-3.4
3,991,031	+		RR42_RS18420	0.75	-1.0
3,991,032	-		RR42_RS18420	0.75	-0.9
3,991,032	-		RR42_RS18420	0.75	-2.2
3,991,032	-		RR42_RS18420	0.75	-1.3
3,991,032	-		RR42_RS18420	0.75	-1.8
3,991,240	+				-3.3
3,991,240	+				-0.6
3,991,240	+				-1.6
3,991,241	-				-2.9
3,991,241	-				-1.7
3,991,241	-				-2.3
3,991,241	-				-1.9
3,991,241	-				-1.9
3,991,252	+				-1.4
3,991,252	+				-3.4
3,991,329	-				-2.0
3,991,329	-				-0.8
3,991,358	+				+0.4
3,991,408	+				-0.5
3,991,426	+				-1.9
3,991,426	+				+0.0
3,991,426	+				-0.5
3,991,427	-				+0.1
3,991,427	-				+1.2
3,991,427	-				-0.8
3,991,429	+				-1.7
3,991,449	-				+0.4
3,991,483	+				-0.3
3,991,483	+				-0.9
3,991,515	+				+1.6
3,991,516	-				-0.1
3,991,516	-				+0.1
3,991,525	+				+0.4
3,991,525	+				-1.7
3,991,533	-				-0.3
3,991,864	-		RR42_RS18425	0.69	+0.5
3,991,902	+		RR42_RS18425	0.82	+1.1
3,991,935	-				+0.8
3,991,947	+				+0.1
3,991,947	+				+1.1
3,991,947	+				-1.2
3,991,947	+				-0.1
3,991,948	-				-0.5
3,991,948	-				+0.1
3,991,948	-				-0.9
3,991,948	-				+0.5
3,991,995	-				-0.4
3,992,027	-				+0.7
3,992,117	+				-0.9
3,992,117	+				-0.1
3,992,162	+				-2.1
3,992,162	+				+1.3
3,992,162	+				+0.3
3,992,163	-				+0.4
3,992,163	-				-0.4
3,992,163	-				+0.8
3,992,163	-				+0.7
3,992,165	+				+0.3
3,992,165	+				+0.6
3,992,165	+				-0.0
3,992,166	-				+0.9
3,992,166	-				+0.8
3,992,166	-				-1.1
3,992,167	+				+1.1
3,992,168	-				-0.7