Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17685

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
3,825,740	+				+0.2
3,825,741	-				+2.2
3,825,849	+				+0.1
3,825,849	+				+1.2
3,825,896	-				-0.4
3,825,997	+		RR42_RS17680	0.13	+0.9
3,826,102	+		RR42_RS17680	0.27	+0.4
3,826,102	+		RR42_RS17680	0.27	-0.9
3,826,102	+		RR42_RS17680	0.27	+0.2
3,826,103	-		RR42_RS17680	0.27	+0.6
3,826,103	-		RR42_RS17680	0.27	-0.8
3,826,167	-		RR42_RS17680	0.36	-1.6
3,826,202	-		RR42_RS17680	0.41	+0.0
3,826,253	-		RR42_RS17680	0.48	+1.4
3,826,467	+		RR42_RS17680	0.78	-0.4
3,826,467	+		RR42_RS17680	0.78	+0.2
3,826,467	+		RR42_RS17680	0.78	+1.8
3,826,467	+		RR42_RS17680	0.78	+0.5
3,826,467	+		RR42_RS17680	0.78	+0.7
3,826,468	-		RR42_RS17680	0.79	-0.3
3,826,468	-		RR42_RS17680	0.79	-0.6
3,826,468	-		RR42_RS17680	0.79	+0.9
3,826,468	-		RR42_RS17680	0.79	+0.5
3,826,468	-		RR42_RS17680	0.79	-0.2
3,826,468	-		RR42_RS17680	0.79	-1.2
3,826,468	-		RR42_RS17680	0.79	-0.9
3,826,468	-		RR42_RS17680	0.79	-0.6
3,826,468	-		RR42_RS17680	0.79	+2.2
3,826,468	-		RR42_RS17680	0.79	-1.0
3,826,468	-		RR42_RS17680	0.79	+0.7
3,826,469	+		RR42_RS17680	0.79	+2.2
3,826,470	-		RR42_RS17680	0.79	+0.2
3,826,470	-		RR42_RS17680	0.79	-1.8
3,826,477	+		RR42_RS17680	0.80	-1.1
3,826,477	+		RR42_RS17680	0.80	-0.5
3,826,478	-		RR42_RS17680	0.80	+1.0
3,826,478	-		RR42_RS17680	0.80	+0.6
3,826,478	-		RR42_RS17680	0.80	+0.2
3,826,698	+				+1.5
3,826,698	+				-0.4
3,826,698	+				+0.0
3,826,698	+				-0.6
3,826,698	+				-0.5
3,826,699	-				-0.4
3,826,699	-				+0.5
3,826,699	-				-0.8
3,826,699	-				-0.3
3,826,699	-				+0.4
3,826,699	-				+0.7
3,826,717	+				-1.4
3,826,717	+				-0.1
3,826,718	-				+0.1
3,826,718	-				-0.5
3,826,832	+		RR42_RS17685	0.18	-2.2
3,826,832	+		RR42_RS17685	0.18	-3.2
3,826,832	+		RR42_RS17685	0.18	-1.5
3,826,832	+		RR42_RS17685	0.18	-0.5
3,826,833	-		RR42_RS17685	0.18	-0.9
3,826,833	-		RR42_RS17685	0.18	-2.4
3,827,024	+		RR42_RS17685	0.53	-0.6
3,827,025	-		RR42_RS17685	0.53	+2.0
3,827,078	-		RR42_RS17685	0.63	-1.7
3,827,111	+		RR42_RS17685	0.69	-0.7
3,827,186	+		RR42_RS17685	0.83	-1.9
3,827,186	+		RR42_RS17685	0.83	-1.4
3,827,187	-		RR42_RS17685	0.83	+0.2
3,827,188	+		RR42_RS17685	0.83	-1.2
3,827,189	-		RR42_RS17685	0.83	-2.1
3,827,189	-		RR42_RS17685	0.83	-1.2
3,827,189	-		RR42_RS17685	0.83	-0.8
3,827,189	-		RR42_RS17685	0.83	+0.6
3,827,222	+		RR42_RS17685	0.89	+0.2
3,827,275	+				+0.3
3,827,275	+				-0.1
3,827,316	-				+0.1
3,827,413	-				-3.2
3,827,413	-				-2.1
3,827,413	-				-0.1
3,827,418	+				-0.4
3,827,440	+				+0.3
3,827,440	+				-2.1
3,827,440	+				-0.1
3,827,440	+				-0.4
3,827,445	+				+1.5
3,827,590	+		RR42_RS17690	0.13	+0.2
3,827,596	+		RR42_RS17690	0.14	+0.2
3,827,606	+		RR42_RS17690	0.16	-0.8
3,827,664	+		RR42_RS17690	0.29	-1.6
3,827,703	+		RR42_RS17690	0.38	-0.9
3,827,703	+		RR42_RS17690	0.38	+0.6
3,827,760	+		RR42_RS17690	0.50	+0.4
3,827,760	+		RR42_RS17690	0.50	-0.5
3,827,760	+		RR42_RS17690	0.50	-0.9
3,827,766	+		RR42_RS17690	0.52	-0.0
3,827,766	+		RR42_RS17690	0.52	+1.0
3,827,766	+		RR42_RS17690	0.52	+0.6
3,827,774	+		RR42_RS17690	0.54	-0.3
3,827,774	+		RR42_RS17690	0.54	-0.3
3,827,869	+		RR42_RS17690	0.75	+0.2
3,827,869	+		RR42_RS17690	0.75	+0.3
3,827,869	+		RR42_RS17690	0.75	-1.0
3,827,869	+		RR42_RS17690	0.75	-0.0
3,827,869	+		RR42_RS17690	0.75	+0.4
3,827,869	+		RR42_RS17690	0.75	+0.2
3,827,869	+		RR42_RS17690	0.75	-0.8
3,827,869	+		RR42_RS17690	0.75	+0.8
3,827,938	+				+0.4
3,827,938	+				-0.1
3,827,938	+				-0.1
3,827,938	+				-0.4
3,827,938	+				-1.2
3,827,938	+				+0.6
3,827,989	+				+1.1
3,827,989	+				+0.4
3,827,989	+				-1.0
3,828,000	+				+0.6
3,828,000	+				-0.6