Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17045 and RR42_RS17050 overlap by 4 nucleotides RR42_RS17050 and RR42_RS17055 are separated by 241 nucleotides RR42_RS17055 and RR42_RS17060 are separated by 97 nucleotides
RR42_RS17045: RR42_RS17045 - SAM-dependent methyltransferase, at 3,691,185 to 3,692,591
_RS17045
RR42_RS17050: RR42_RS17050 - phosphoribosylglycinamide formyltransferase, at 3,692,588 to 3,693,244
_RS17050
RR42_RS17055: RR42_RS17055 - LuxR family transcriptional regulator, at 3,693,486 to 3,694,145
_RS17055
RR42_RS17060: RR42_RS17060 - histidine kinase, at 3,694,243 to 3,696,033
_RS17060
Position (kb)
3693
3694
3695 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3692.580 kb on - strand at 3692.623 kb on + strand at 3692.658 kb on - strand, within RR42_RS17050 at 3692.658 kb on - strand, within RR42_RS17050 at 3692.717 kb on - strand, within RR42_RS17050 at 3692.717 kb on - strand, within RR42_RS17050 at 3692.717 kb on - strand, within RR42_RS17050 at 3692.717 kb on - strand, within RR42_RS17050 at 3692.717 kb on - strand, within RR42_RS17050 at 3692.884 kb on + strand, within RR42_RS17050 at 3692.885 kb on - strand, within RR42_RS17050 at 3692.944 kb on - strand, within RR42_RS17050 at 3693.060 kb on + strand, within RR42_RS17050 at 3693.060 kb on + strand, within RR42_RS17050 at 3693.060 kb on + strand, within RR42_RS17050 at 3693.060 kb on + strand, within RR42_RS17050 at 3693.061 kb on - strand, within RR42_RS17050 at 3693.062 kb on + strand, within RR42_RS17050 at 3693.063 kb on - strand, within RR42_RS17050 at 3693.063 kb on - strand, within RR42_RS17050 at 3693.063 kb on - strand, within RR42_RS17050 at 3693.063 kb on - strand, within RR42_RS17050 at 3693.063 kb on - strand, within RR42_RS17050 at 3693.063 kb on - strand, within RR42_RS17050 at 3693.235 kb on + strand at 3693.255 kb on + strand at 3693.255 kb on + strand at 3693.256 kb on - strand at 3693.256 kb on - strand at 3693.256 kb on - strand at 3693.272 kb on + strand at 3693.273 kb on - strand at 3693.295 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.303 kb on - strand at 3693.346 kb on - strand at 3693.347 kb on + strand at 3693.348 kb on - strand at 3693.348 kb on - strand at 3693.399 kb on - strand at 3693.399 kb on - strand at 3693.432 kb on - strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.530 kb on + strand at 3693.531 kb on - strand at 3693.531 kb on - strand at 3693.531 kb on - strand at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.620 kb on + strand, within RR42_RS17055 at 3693.621 kb on - strand, within RR42_RS17055 at 3693.662 kb on + strand, within RR42_RS17055 at 3693.663 kb on - strand, within RR42_RS17055 at 3693.663 kb on - strand, within RR42_RS17055 at 3693.680 kb on + strand, within RR42_RS17055 at 3693.681 kb on - strand, within RR42_RS17055 at 3693.718 kb on + strand, within RR42_RS17055 at 3693.718 kb on + strand, within RR42_RS17055 at 3693.718 kb on + strand, within RR42_RS17055 at 3693.719 kb on - strand, within RR42_RS17055 at 3693.734 kb on + strand, within RR42_RS17055 at 3693.735 kb on - strand at 3694.316 kb on + strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.317 kb on - strand at 3694.742 kb on + strand, within RR42_RS17060 at 3694.742 kb on + strand at 3694.835 kb on + strand, within RR42_RS17060 at 3694.835 kb on + strand, within RR42_RS17060 at 3694.835 kb on + strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.836 kb on - strand, within RR42_RS17060 at 3694.839 kb on - strand, within RR42_RS17060 at 3694.873 kb on - strand, within RR42_RS17060 at 3694.908 kb on + strand at 3694.908 kb on + strand, within RR42_RS17060 at 3694.909 kb on - strand, within RR42_RS17060 at 3694.956 kb on + strand at 3694.956 kb on + strand, within RR42_RS17060 at 3694.958 kb on + strand, within RR42_RS17060 at 3694.959 kb on - strand, within RR42_RS17060 at 3695.024 kb on + strand, within RR42_RS17060 at 3695.024 kb on + strand, within RR42_RS17060 at 3695.024 kb on + strand, within RR42_RS17060 at 3695.025 kb on - strand, within RR42_RS17060 at 3695.025 kb on - strand, within RR42_RS17060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 3,692,580 - -0.4 3,692,623 + -1.1 3,692,658 - RR42_RS17050 0.11 +0.6 3,692,658 - RR42_RS17050 0.11 +0.6 3,692,717 - RR42_RS17050 0.20 +1.0 3,692,717 - RR42_RS17050 0.20 +1.2 3,692,717 - RR42_RS17050 0.20 -1.0 3,692,717 - RR42_RS17050 0.20 +0.1 3,692,717 - RR42_RS17050 0.20 -0.9 3,692,884 + RR42_RS17050 0.45 -1.3 3,692,885 - RR42_RS17050 0.45 +0.6 3,692,944 - RR42_RS17050 0.54 -0.2 3,693,060 + RR42_RS17050 0.72 -1.4 3,693,060 + RR42_RS17050 0.72 -0.6 3,693,060 + RR42_RS17050 0.72 -1.8 3,693,060 + RR42_RS17050 0.72 -0.0 3,693,061 - RR42_RS17050 0.72 +0.2 3,693,062 + RR42_RS17050 0.72 +1.5 3,693,063 - RR42_RS17050 0.72 +2.2 3,693,063 - RR42_RS17050 0.72 +0.2 3,693,063 - RR42_RS17050 0.72 -1.4 3,693,063 - RR42_RS17050 0.72 -1.1 3,693,063 - RR42_RS17050 0.72 +0.3 3,693,063 - RR42_RS17050 0.72 +0.2 3,693,235 + +0.3 3,693,255 + -3.1 3,693,255 + +0.5 3,693,256 - -0.2 3,693,256 - -0.6 3,693,256 - +0.2 3,693,272 + +0.9 3,693,273 - -1.6 3,693,295 - +0.7 3,693,303 - -0.4 3,693,303 - -0.3 3,693,303 - +0.5 3,693,303 - +1.1 3,693,303 - -0.1 3,693,346 - +0.4 3,693,347 + -0.2 3,693,348 - -0.1 3,693,348 - +1.6 3,693,399 - +2.8 3,693,399 - +2.2 3,693,432 - +1.5 3,693,530 + +1.7 3,693,530 + +3.7 3,693,530 + +1.8 3,693,530 + -1.0 3,693,530 + +1.5 3,693,530 + +1.8 3,693,531 - +1.6 3,693,531 - +1.5 3,693,531 - +2.0 3,693,620 + RR42_RS17055 0.20 +2.3 3,693,620 + RR42_RS17055 0.20 +1.7 3,693,620 + RR42_RS17055 0.20 +1.9 3,693,620 + RR42_RS17055 0.20 +0.9 3,693,620 + RR42_RS17055 0.20 +0.5 3,693,621 - RR42_RS17055 0.20 +2.4 3,693,662 + RR42_RS17055 0.27 +0.9 3,693,663 - RR42_RS17055 0.27 +1.0 3,693,663 - RR42_RS17055 0.27 +2.5 3,693,680 + RR42_RS17055 0.29 +1.7 3,693,681 - RR42_RS17055 0.30 +1.2 3,693,718 + RR42_RS17055 0.35 +1.7 3,693,718 + RR42_RS17055 0.35 +2.0 3,693,718 + RR42_RS17055 0.35 +1.4 3,693,719 - RR42_RS17055 0.35 +0.8 3,693,734 + RR42_RS17055 0.38 +0.1 3,693,735 - +0.9 3,694,316 + +3.0 3,694,317 - +0.6 3,694,317 - +2.6 3,694,317 - +0.2 3,694,317 - +1.9 3,694,317 - +1.7 3,694,317 - +1.6 3,694,317 - +2.3 3,694,317 - +2.2 3,694,742 + RR42_RS17060 0.28 +1.8 3,694,742 + +1.2 3,694,835 + RR42_RS17060 0.33 +1.2 3,694,835 + RR42_RS17060 0.33 +2.0 3,694,835 + RR42_RS17060 0.33 +1.1 3,694,836 - RR42_RS17060 0.33 +1.5 3,694,836 - RR42_RS17060 0.33 +0.8 3,694,836 - RR42_RS17060 0.33 +2.0 3,694,836 - RR42_RS17060 0.33 +1.4 3,694,839 - RR42_RS17060 0.33 +2.7 3,694,873 - RR42_RS17060 0.35 +0.9 3,694,908 + +0.2 3,694,908 + RR42_RS17060 0.37 +2.0 3,694,909 - RR42_RS17060 0.37 +1.3 3,694,956 + +1.2 3,694,956 + RR42_RS17060 0.40 +2.0 3,694,958 + RR42_RS17060 0.40 +2.6 3,694,959 - RR42_RS17060 0.40 +1.7 3,695,024 + RR42_RS17060 0.44 +1.4 3,695,024 + RR42_RS17060 0.44 +1.3 3,695,024 + RR42_RS17060 0.44 +1.5 3,695,025 - RR42_RS17060 0.44 +1.7 3,695,025 - RR42_RS17060 0.44 +0.8
Or see this region's nucleotide sequence