Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16760

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16755 and RR42_RS16760 overlap by 4 nucleotidesRR42_RS16760 and RR42_RS16765 are separated by 22 nucleotides RR42_RS16755: RR42_RS16755 - FAD-linked oxidase, at 3,623,647 to 3,625,200 _RS16755 RR42_RS16760: RR42_RS16760 - FAD-dependent oxidoreductase, at 3,625,197 to 3,626,876 _RS16760 RR42_RS16765: RR42_RS16765 - glycerol kinase, at 3,626,899 to 3,628,422 _RS16765 Position (kb) 3625 3626 3627Strain fitness (log2 ratio) -2 -1 0 1at 3624.291 kb on - strand, within RR42_RS16755at 3624.374 kb on + strand, within RR42_RS16755at 3625.045 kb on - strandat 3625.154 kb on + strandat 3625.169 kb on + strandat 3625.441 kb on + strand, within RR42_RS16760at 3625.579 kb on + strand, within RR42_RS16760at 3625.611 kb on - strand, within RR42_RS16760at 3625.943 kb on - strand, within RR42_RS16760at 3626.323 kb on + strand, within RR42_RS16760at 3626.324 kb on - strand, within RR42_RS16760at 3626.612 kb on - strand, within RR42_RS16760at 3627.566 kb on + strand, within RR42_RS16765at 3627.845 kb on + strand, within RR42_RS16765at 3627.845 kb on + strand, within RR42_RS16765at 3627.845 kb on + strand, within RR42_RS16765

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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3,624,291 - RR42_RS16755 0.41 +0.8
3,624,374 + RR42_RS16755 0.47 -0.1
3,625,045 - -0.4
3,625,154 + +1.4
3,625,169 + +0.8
3,625,441 + RR42_RS16760 0.15 -1.3
3,625,579 + RR42_RS16760 0.23 +0.4
3,625,611 - RR42_RS16760 0.25 +1.0
3,625,943 - RR42_RS16760 0.44 -0.1
3,626,323 + RR42_RS16760 0.67 -1.1
3,626,324 - RR42_RS16760 0.67 -1.0
3,626,612 - RR42_RS16760 0.84 -2.4
3,627,566 + RR42_RS16765 0.44 -0.4
3,627,845 + RR42_RS16765 0.62 +0.4
3,627,845 + RR42_RS16765 0.62 +0.4
3,627,845 + RR42_RS16765 0.62 +1.2

Or see this region's nucleotide sequence