Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16535

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
3,580,759	+				+0.1
3,580,759	+				+0.4
3,580,759	+				+0.6
3,580,952	-		RR42_RS16530	0.20	-1.2
3,581,065	+		RR42_RS16530	0.32	-1.6
3,581,066	-		RR42_RS16530	0.32	+0.4
3,581,074	-		RR42_RS16530	0.33	+0.7
3,581,074	-		RR42_RS16530	0.33	-0.2
3,581,126	-		RR42_RS16530	0.39	-1.2
3,581,140	+		RR42_RS16530	0.40	+0.9
3,581,186	+		RR42_RS16530	0.45	-0.6
3,581,228	+		RR42_RS16530	0.50	+0.0
3,581,228	+		RR42_RS16530	0.50	-0.3
3,581,405	+		RR42_RS16530	0.68	-1.4
3,581,406	-		RR42_RS16530	0.68	-0.6
3,581,453	+		RR42_RS16530	0.73	-0.2
3,581,454	-		RR42_RS16530	0.73	-0.4
3,581,527	+		RR42_RS16530	0.81	-0.4
3,581,527	+		RR42_RS16530	0.81	-0.5
3,581,527	+		RR42_RS16530	0.81	+0.7
3,581,528	-		RR42_RS16530	0.81	+0.2
3,581,540	-		RR42_RS16530	0.83	+1.9
3,581,745	+				-0.2
3,582,003	-		RR42_RS16535	0.75	+0.1
3,582,033	-		RR42_RS16535	0.84	+1.4
3,582,051	+		RR42_RS16535	0.89	-0.9
3,582,061	+				+1.4
3,582,232	+				-1.1
3,582,232	+				+0.0
3,582,233	-				+0.8
3,582,239	-				+0.1
3,582,242	+				+0.3
3,582,242	+				+0.2
3,582,242	+				-0.8
3,582,243	-				+0.4
3,582,298	-				-0.4
3,582,298	-				+1.2
3,582,429	+				-1.6
3,582,429	+				+0.4
3,582,521	+				+0.6
3,582,521	+				+0.2
3,582,521	+				-0.4
3,582,522	-				-0.6
3,582,522	-				+0.1
3,582,625	+		RR42_RS16540	0.12	-0.8
3,582,748	+		RR42_RS16540	0.18	+0.5
3,582,769	+		RR42_RS16540	0.19	-0.6
3,582,769	+		RR42_RS16540	0.19	+2.2
3,582,769	+		RR42_RS16540	0.19	+0.1
3,582,769	+		RR42_RS16540	0.19	-0.2
3,582,911	+		RR42_RS16540	0.25	+0.4
3,582,962	+		RR42_RS16540	0.28	-1.8
3,582,998	+		RR42_RS16540	0.29	-0.4
3,582,999	-		RR42_RS16540	0.29	-0.3
3,582,999	-		RR42_RS16540	0.29	+0.3
3,583,076	+		RR42_RS16540	0.33	-0.4
3,583,077	-		RR42_RS16540	0.33	+1.5