Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16310

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16305 and RR42_RS16310 are separated by 578 nucleotidesRR42_RS16310 and RR42_RS16315 are separated by 407 nucleotides RR42_RS16305: RR42_RS16305 - hypothetical protein, at 3,529,013 to 3,529,534 _RS16305 RR42_RS16310: RR42_RS16310 - hypothetical protein, at 3,530,113 to 3,530,634 _RS16310 RR42_RS16315: RR42_RS16315 - hypothetical protein, at 3,531,042 to 3,532,973 _RS16315 Position (kb) 3530 3531Strain fitness (log2 ratio) -1 0 1at 3529.338 kb on + strand, within RR42_RS16305at 3529.411 kb on + strand, within RR42_RS16305at 3529.483 kb on - strandat 3530.494 kb on + strand, within RR42_RS16310at 3530.565 kb on - strand, within RR42_RS16310at 3530.582 kb on + strandat 3530.734 kb on + strandat 3530.735 kb on - strandat 3530.757 kb on + strandat 3530.761 kb on - strandat 3530.909 kb on + strandat 3530.909 kb on + strandat 3530.980 kb on + strandat 3531.020 kb on - strandat 3531.126 kb on + strandat 3531.308 kb on - strand, within RR42_RS16315at 3531.308 kb on - strand, within RR42_RS16315at 3531.308 kb on - strand, within RR42_RS16315at 3531.569 kb on - strand, within RR42_RS16315at 3531.569 kb on - strand, within RR42_RS16315at 3531.569 kb on - strand, within RR42_RS16315at 3531.569 kb on - strand, within RR42_RS16315at 3531.569 kb on - strand, within RR42_RS16315at 3531.569 kb on - strand, within RR42_RS16315at 3531.569 kb on - strand, within RR42_RS16315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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3,529,338 + RR42_RS16305 0.62 +0.2
3,529,411 + RR42_RS16305 0.76 +0.6
3,529,483 - -0.1
3,530,494 + RR42_RS16310 0.73 +0.2
3,530,565 - RR42_RS16310 0.87 +1.2
3,530,582 + -0.1
3,530,734 + +1.4
3,530,735 - +0.0
3,530,757 + -0.1
3,530,761 - +0.9
3,530,909 + +0.0
3,530,909 + +0.7
3,530,980 + -1.2
3,531,020 - +1.2
3,531,126 + -0.6
3,531,308 - RR42_RS16315 0.14 -0.0
3,531,308 - RR42_RS16315 0.14 -1.0
3,531,308 - RR42_RS16315 0.14 +1.5
3,531,569 - RR42_RS16315 0.27 +0.4
3,531,569 - RR42_RS16315 0.27 +0.2
3,531,569 - RR42_RS16315 0.27 -0.7
3,531,569 - RR42_RS16315 0.27 -0.6
3,531,569 - RR42_RS16315 0.27 -0.3
3,531,569 - RR42_RS16315 0.27 -0.4
3,531,569 - RR42_RS16315 0.27 -0.5

Or see this region's nucleotide sequence