Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13905

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
2,996,380	-		RR42_RS13900	0.34	-1.0
2,996,472	+		RR42_RS13900	0.45	-0.2
2,996,473	-		RR42_RS13900	0.45	+1.3
2,996,473	-		RR42_RS13900	0.45	-0.4
2,996,498	-		RR42_RS13900	0.48	-0.3
2,996,506	+		RR42_RS13900	0.49	+0.3
2,996,923	+				+0.4
2,996,942	+				+0.2
2,996,943	-				+0.6
2,996,943	-				+0.0
2,997,018	+				-0.1
2,997,018	+				-0.0
2,997,019	-				-0.1
2,997,019	-				-0.4
2,997,019	-				+0.6
2,997,019	-				+0.7
2,997,143	+				+0.3
2,997,143	+				-0.0
2,997,143	+				+1.1
2,997,143	+				+0.3
2,997,144	-				-0.4
2,997,149	+				+0.6
2,997,248	+				-0.5
2,997,248	+				+0.4
2,997,248	+				+0.7
2,997,248	+				-0.2
2,997,248	+				-0.5
2,997,248	+				-0.3
2,997,248	+				-1.0
2,997,249	-				-2.4
2,997,249	-				-3.8
2,997,257	+				+0.4
2,997,258	-				-3.1
2,997,258	-				-0.6
2,997,261	-				-2.4
2,997,275	+				+0.7
2,997,275	+				+0.4
2,997,896	+		RR42_RS13905	0.46	-0.5
2,997,896	+		RR42_RS13905	0.46	+0.7
2,997,897	-		RR42_RS13905	0.46	-2.4
2,998,313	+		RR42_RS13905	0.73	-1.1
2,998,313	+		RR42_RS13905	0.73	+1.4
2,998,314	-		RR42_RS13905	0.73	-2.7
2,998,317	-		RR42_RS13905	0.74	-1.1
2,998,317	-		RR42_RS13905	0.74	-2.1
2,998,379	-		RR42_RS13905	0.78	-1.0
2,998,497	-		RR42_RS13905	0.85	-2.3
2,998,524	-		RR42_RS13905	0.87	-0.7
2,998,910	+		RR42_RS13910	0.12	-3.6
2,998,910	+		RR42_RS13910	0.12	-4.5
2,998,911	-		RR42_RS13910	0.12	-1.5
2,999,312	+		RR42_RS13910	0.61	-2.7
2,999,352	+		RR42_RS13910	0.66	-3.9
2,999,352	+		RR42_RS13910	0.66	-2.8
2,999,353	-		RR42_RS13910	0.66	-1.5
2,999,353	-		RR42_RS13910	0.66	-1.6
2,999,353	-		RR42_RS13910	0.66	-2.7
2,999,353	-		RR42_RS13910	0.66	-1.1
2,999,516	+		RR42_RS13910	0.86	-2.2
2,999,517	-		RR42_RS13910	0.86	-2.7