Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13795 and RR42_RS13800 are separated by 115 nucleotides RR42_RS13800 and RR42_RS13805 are separated by 29 nucleotides RR42_RS13805 and RR42_RS13810 are separated by 90 nucleotides
RR42_RS13795: RR42_RS13795 - DeoR family transcriptional regulator, at 2,976,629 to 2,977,396
_RS13795
RR42_RS13800: RR42_RS13800 - formyltetrahydrofolate deformylase, at 2,977,512 to 2,978,378
_RS13800
RR42_RS13805: RR42_RS13805 - NTP pyrophosphohydrolase, at 2,978,408 to 2,979,274
_RS13805
RR42_RS13810: RR42_RS13810 - glycerol kinase, at 2,979,365 to 2,980,927
_RS13810
Position (kb)
2977
2978
2979 Strain fitness (log2 ratio)
-1
0
1
2 at 2976.617 kb on + strand at 2976.617 kb on + strand at 2976.636 kb on + strand at 2976.637 kb on - strand at 2977.513 kb on + strand at 2977.514 kb on - strand at 2977.514 kb on - strand at 2977.703 kb on - strand, within RR42_RS13800 at 2977.750 kb on + strand, within RR42_RS13800 at 2977.753 kb on + strand, within RR42_RS13800 at 2977.754 kb on - strand, within RR42_RS13800 at 2977.852 kb on + strand, within RR42_RS13800 at 2977.853 kb on - strand, within RR42_RS13800 at 2977.853 kb on - strand, within RR42_RS13800 at 2977.853 kb on - strand, within RR42_RS13800 at 2977.975 kb on + strand, within RR42_RS13800 at 2977.975 kb on + strand, within RR42_RS13800 at 2977.975 kb on + strand, within RR42_RS13800 at 2977.975 kb on + strand, within RR42_RS13800 at 2978.282 kb on + strand, within RR42_RS13800 at 2978.283 kb on - strand, within RR42_RS13800 at 2978.370 kb on - strand at 2978.507 kb on - strand, within RR42_RS13805 at 2978.598 kb on + strand, within RR42_RS13805 at 2978.598 kb on + strand, within RR42_RS13805 at 2978.599 kb on - strand, within RR42_RS13805 at 2978.599 kb on - strand, within RR42_RS13805 at 2978.604 kb on + strand, within RR42_RS13805 at 2978.604 kb on + strand, within RR42_RS13805 at 2978.604 kb on + strand, within RR42_RS13805 at 2978.604 kb on + strand, within RR42_RS13805 at 2978.604 kb on + strand, within RR42_RS13805 at 2978.605 kb on - strand, within RR42_RS13805 at 2979.100 kb on + strand, within RR42_RS13805 at 2979.101 kb on - strand, within RR42_RS13805 at 2979.326 kb on + strand at 2979.326 kb on + strand at 2979.327 kb on - strand at 2979.331 kb on + strand at 2979.331 kb on + strand at 2979.331 kb on + strand at 2979.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 2,976,617 + -0.3 2,976,617 + +0.3 2,976,636 + +1.4 2,976,637 - -0.7 2,977,513 + +0.0 2,977,514 - +0.1 2,977,514 - +0.4 2,977,703 - RR42_RS13800 0.22 +0.5 2,977,750 + RR42_RS13800 0.27 +1.9 2,977,753 + RR42_RS13800 0.28 +0.3 2,977,754 - RR42_RS13800 0.28 +0.9 2,977,852 + RR42_RS13800 0.39 +0.3 2,977,853 - RR42_RS13800 0.39 +0.7 2,977,853 - RR42_RS13800 0.39 +0.4 2,977,853 - RR42_RS13800 0.39 +0.3 2,977,975 + RR42_RS13800 0.53 -0.6 2,977,975 + RR42_RS13800 0.53 +0.4 2,977,975 + RR42_RS13800 0.53 -0.6 2,977,975 + RR42_RS13800 0.53 +2.4 2,978,282 + RR42_RS13800 0.89 +0.6 2,978,283 - RR42_RS13800 0.89 +0.4 2,978,370 - +0.3 2,978,507 - RR42_RS13805 0.11 +0.8 2,978,598 + RR42_RS13805 0.22 -1.5 2,978,598 + RR42_RS13805 0.22 -0.1 2,978,599 - RR42_RS13805 0.22 +0.3 2,978,599 - RR42_RS13805 0.22 +0.2 2,978,604 + RR42_RS13805 0.23 +0.6 2,978,604 + RR42_RS13805 0.23 -0.3 2,978,604 + RR42_RS13805 0.23 +1.8 2,978,604 + RR42_RS13805 0.23 +0.2 2,978,604 + RR42_RS13805 0.23 +0.4 2,978,605 - RR42_RS13805 0.23 -0.4 2,979,100 + RR42_RS13805 0.80 +2.0 2,979,101 - RR42_RS13805 0.80 +0.0 2,979,326 + +1.8 2,979,326 + +0.9 2,979,327 - -1.0 2,979,331 + +0.7 2,979,331 + +0.7 2,979,331 + -0.0 2,979,332 - +1.6
Or see this region's nucleotide sequence