Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11610

Experiment: R2A with A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.01 mg/ml
2,483,656	+				+0.0
2,483,682	-				-1.8
2,483,682	-				-0.9
2,483,806	-				-0.5
2,483,936	+		RR42_RS11605	0.21	-0.8
2,483,936	+		RR42_RS11605	0.21	+1.1
2,484,313	+		RR42_RS11605	0.80	+1.0
2,484,314	-		RR42_RS11605	0.80	+0.2
2,484,343	-		RR42_RS11605	0.84	+0.3
2,484,432	-				-0.4
2,484,460	-				+0.3
2,484,460	-				-1.4
2,484,503	+				+1.2
2,484,503	+				+0.4
2,484,534	+				+0.7
2,484,534	+				+0.2
2,484,534	+				+0.0
2,484,534	+				-0.2
2,484,534	+				+1.0
2,484,597	+				-0.1
2,484,597	+				-0.2
2,484,602	+				+0.7
2,484,754	-				+1.1
2,484,922	-		RR42_RS11610	0.14	-0.4
2,484,922	-		RR42_RS11610	0.14	-0.2
2,485,033	-		RR42_RS11610	0.19	-0.0
2,485,034	+		RR42_RS11610	0.19	+0.1
2,485,034	+		RR42_RS11610	0.19	+0.4
2,485,051	+				-0.8
2,485,051	+		RR42_RS11610	0.20	+0.5
2,485,120	-		RR42_RS11610	0.23	-0.1
2,485,194	-		RR42_RS11610	0.26	+0.5
2,485,194	-		RR42_RS11610	0.26	-0.9
2,485,353	+		RR42_RS11610	0.33	-2.4
2,485,372	-		RR42_RS11610	0.34	+1.8
2,485,375	+		RR42_RS11610	0.34	+0.1
2,485,375	+		RR42_RS11610	0.34	-1.3
2,485,375	+		RR42_RS11610	0.34	-0.5
2,485,375	+		RR42_RS11610	0.34	-1.3
2,485,465	-		RR42_RS11610	0.38	+0.3
2,485,471	+		RR42_RS11610	0.38	+0.3
2,485,472	-		RR42_RS11610	0.38	-0.5
2,485,691	+		RR42_RS11610	0.48	-0.3
2,485,692	-		RR42_RS11610	0.48	-0.2
2,485,692	-		RR42_RS11610	0.48	+0.8
2,485,866	+		RR42_RS11610	0.56	+0.2
2,486,407	+		RR42_RS11610	0.79	+0.2
2,486,408	-		RR42_RS11610	0.79	-0.5
2,486,409	+		RR42_RS11610	0.79	-1.2
2,486,409	+		RR42_RS11610	0.79	-0.4
2,486,410	-		RR42_RS11610	0.79	-0.8
2,486,410	-		RR42_RS11610	0.79	+1.0
2,486,466	-		RR42_RS11610	0.82	+0.9
2,486,466	-		RR42_RS11610	0.82	+0.1
2,486,466	-		RR42_RS11610	0.82	-2.7
2,486,466	-		RR42_RS11610	0.82	-0.0
2,486,524	+		RR42_RS11610	0.84	-0.5
2,486,582	+		RR42_RS11610	0.87	-0.5
2,486,653	+		RR42_RS11610	0.90	-0.0
2,486,945	+				+0.2
2,486,996	+				-0.7
2,486,996	+				-0.1
2,486,997	-				+0.6
2,487,033	+				+0.1
2,487,190	+		RR42_RS11615	0.17	-1.3
2,487,190	+		RR42_RS11615	0.17	+0.5
2,487,190	+		RR42_RS11615	0.17	-0.1
2,487,255	-		RR42_RS11615	0.22	+0.6
2,487,272	+		RR42_RS11615	0.24	-0.2
2,487,273	-		RR42_RS11615	0.24	+1.1
2,487,374	+		RR42_RS11615	0.32	-0.6
2,487,488	+		RR42_RS11615	0.41	+0.8
2,487,853	-		RR42_RS11615	0.69	-0.6