Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11205 and RR42_RS11210 are separated by 62 nucleotides RR42_RS11210 and RR42_RS11215 are separated by 67 nucleotides
RR42_RS11205: RR42_RS11205 - FAD-dependent oxidoreductase, at 2,393,354 to 2,394,520
_RS11205
RR42_RS11210: RR42_RS11210 - microcystin LR degradation protein MlrC, at 2,394,583 to 2,396,037
_RS11210
RR42_RS11215: RR42_RS11215 - peptide ABC transporter permease, at 2,396,105 to 2,397,688
_RS11215
Position (kb)
2394
2395
2396
2397 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2393.789 kb on + strand, within RR42_RS11205 at 2394.821 kb on - strand, within RR42_RS11210 at 2395.186 kb on - strand, within RR42_RS11210 at 2395.804 kb on - strand, within RR42_RS11210 at 2395.940 kb on - strand at 2395.944 kb on - strand at 2395.944 kb on - strand at 2395.944 kb on - strand at 2395.944 kb on - strand at 2396.072 kb on - strand at 2396.072 kb on - strand at 2396.209 kb on - strand at 2396.255 kb on + strand at 2396.256 kb on - strand at 2396.285 kb on + strand, within RR42_RS11215 at 2396.286 kb on - strand, within RR42_RS11215 at 2396.346 kb on - strand, within RR42_RS11215 at 2396.738 kb on + strand, within RR42_RS11215 at 2396.738 kb on + strand, within RR42_RS11215 at 2396.738 kb on + strand, within RR42_RS11215 at 2396.814 kb on - strand, within RR42_RS11215 at 2396.814 kb on - strand, within RR42_RS11215 at 2396.814 kb on - strand, within RR42_RS11215 at 2396.891 kb on + strand, within RR42_RS11215 at 2396.892 kb on - strand, within RR42_RS11215 at 2396.892 kb on - strand, within RR42_RS11215
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 2,393,789 + RR42_RS11205 0.37 +0.0 2,394,821 - RR42_RS11210 0.16 -0.8 2,395,186 - RR42_RS11210 0.41 -3.5 2,395,804 - RR42_RS11210 0.84 -0.3 2,395,940 - +0.3 2,395,944 - -0.0 2,395,944 - -0.1 2,395,944 - -0.0 2,395,944 - +0.2 2,396,072 - +0.1 2,396,072 - -0.9 2,396,209 - +0.0 2,396,255 + -1.3 2,396,256 - +0.1 2,396,285 + RR42_RS11215 0.11 -1.4 2,396,286 - RR42_RS11215 0.11 +0.5 2,396,346 - RR42_RS11215 0.15 -0.2 2,396,738 + RR42_RS11215 0.40 -0.4 2,396,738 + RR42_RS11215 0.40 -1.0 2,396,738 + RR42_RS11215 0.40 +0.5 2,396,814 - RR42_RS11215 0.45 +0.4 2,396,814 - RR42_RS11215 0.45 +0.3 2,396,814 - RR42_RS11215 0.45 -1.8 2,396,891 + RR42_RS11215 0.50 +1.3 2,396,892 - RR42_RS11215 0.50 -0.5 2,396,892 - RR42_RS11215 0.50 -1.2
Or see this region's nucleotide sequence