Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11210
Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with A22 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,393,789 | + | RR42_RS11205 | 0.37 | +0.0 | |
2,394,821 | - | RR42_RS11210 | 0.16 | -0.8 | |
2,395,186 | - | RR42_RS11210 | 0.41 | -3.5 | |
2,395,804 | - | RR42_RS11210 | 0.84 | -0.3 | |
2,395,940 | - | +0.3 | |||
2,395,944 | - | -0.0 | |||
2,395,944 | - | -0.1 | |||
2,395,944 | - | -0.0 | |||
2,395,944 | - | +0.2 | |||
2,396,072 | - | +0.1 | |||
2,396,072 | - | -0.9 | |||
2,396,209 | - | +0.0 | |||
2,396,255 | + | -1.3 | |||
2,396,256 | - | +0.1 | |||
2,396,285 | + | RR42_RS11215 | 0.11 | -1.4 | |
2,396,286 | - | RR42_RS11215 | 0.11 | +0.5 | |
2,396,346 | - | RR42_RS11215 | 0.15 | -0.2 | |
2,396,738 | + | RR42_RS11215 | 0.40 | -0.4 | |
2,396,738 | + | RR42_RS11215 | 0.40 | -1.0 | |
2,396,738 | + | RR42_RS11215 | 0.40 | +0.5 | |
2,396,814 | - | RR42_RS11215 | 0.45 | +0.4 | |
2,396,814 | - | RR42_RS11215 | 0.45 | +0.3 | |
2,396,814 | - | RR42_RS11215 | 0.45 | -1.8 | |
2,396,891 | + | RR42_RS11215 | 0.50 | +1.3 | |
2,396,892 | - | RR42_RS11215 | 0.50 | -0.5 | |
2,396,892 | - | RR42_RS11215 | 0.50 | -1.2 |
Or see this region's nucleotide sequence