Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11210

Experiment: R2A with A22 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS11205 and RR42_RS11210 are separated by 62 nucleotidesRR42_RS11210 and RR42_RS11215 are separated by 67 nucleotides RR42_RS11205: RR42_RS11205 - FAD-dependent oxidoreductase, at 2,393,354 to 2,394,520 _RS11205 RR42_RS11210: RR42_RS11210 - microcystin LR degradation protein MlrC, at 2,394,583 to 2,396,037 _RS11210 RR42_RS11215: RR42_RS11215 - peptide ABC transporter permease, at 2,396,105 to 2,397,688 _RS11215 Position (kb) 2394 2395 2396 2397Strain fitness (log2 ratio) -3 -2 -1 0 1at 2393.789 kb on + strand, within RR42_RS11205at 2394.821 kb on - strand, within RR42_RS11210at 2395.186 kb on - strand, within RR42_RS11210at 2395.804 kb on - strand, within RR42_RS11210at 2395.940 kb on - strandat 2395.944 kb on - strandat 2395.944 kb on - strandat 2395.944 kb on - strandat 2395.944 kb on - strandat 2396.072 kb on - strandat 2396.072 kb on - strandat 2396.209 kb on - strandat 2396.255 kb on + strandat 2396.256 kb on - strandat 2396.285 kb on + strand, within RR42_RS11215at 2396.286 kb on - strand, within RR42_RS11215at 2396.346 kb on - strand, within RR42_RS11215at 2396.738 kb on + strand, within RR42_RS11215at 2396.738 kb on + strand, within RR42_RS11215at 2396.738 kb on + strand, within RR42_RS11215at 2396.814 kb on - strand, within RR42_RS11215at 2396.814 kb on - strand, within RR42_RS11215at 2396.814 kb on - strand, within RR42_RS11215at 2396.891 kb on + strand, within RR42_RS11215at 2396.892 kb on - strand, within RR42_RS11215at 2396.892 kb on - strand, within RR42_RS11215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
remove
2,393,789 + RR42_RS11205 0.37 +0.0
2,394,821 - RR42_RS11210 0.16 -0.8
2,395,186 - RR42_RS11210 0.41 -3.5
2,395,804 - RR42_RS11210 0.84 -0.3
2,395,940 - +0.3
2,395,944 - -0.0
2,395,944 - -0.1
2,395,944 - -0.0
2,395,944 - +0.2
2,396,072 - +0.1
2,396,072 - -0.9
2,396,209 - +0.0
2,396,255 + -1.3
2,396,256 - +0.1
2,396,285 + RR42_RS11215 0.11 -1.4
2,396,286 - RR42_RS11215 0.11 +0.5
2,396,346 - RR42_RS11215 0.15 -0.2
2,396,738 + RR42_RS11215 0.40 -0.4
2,396,738 + RR42_RS11215 0.40 -1.0
2,396,738 + RR42_RS11215 0.40 +0.5
2,396,814 - RR42_RS11215 0.45 +0.4
2,396,814 - RR42_RS11215 0.45 +0.3
2,396,814 - RR42_RS11215 0.45 -1.8
2,396,891 + RR42_RS11215 0.50 +1.3
2,396,892 - RR42_RS11215 0.50 -0.5
2,396,892 - RR42_RS11215 0.50 -1.2

Or see this region's nucleotide sequence