Experiment: R2A with A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS10900 and RR42_RS10905 are separated by 123 nucleotides RR42_RS10905 and RR42_RS10910 are separated by 8 nucleotides
RR42_RS10900: RR42_RS10900 - DNA polymerase III subunit delta', at 2,331,541 to 2,332,548
_RS10900
RR42_RS10905: RR42_RS10905 - thymidylate kinase, at 2,332,672 to 2,333,286
_RS10905
RR42_RS10910: RR42_RS10910 - aminodeoxychorismate lyase, at 2,333,295 to 2,334,290
_RS10910
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2332.542 kb on - strand at 2332.564 kb on - strand at 2332.564 kb on - strand at 2332.582 kb on - strand at 2332.586 kb on - strand at 2332.586 kb on - strand at 2332.586 kb on - strand at 2332.586 kb on - strand at 2332.635 kb on - strand at 2333.297 kb on - strand at 2333.297 kb on - strand at 2333.387 kb on - strand at 2333.484 kb on - strand, within RR42_RS10910 at 2333.484 kb on - strand, within RR42_RS10910 at 2333.484 kb on - strand, within RR42_RS10910 at 2333.484 kb on - strand, within RR42_RS10910 at 2333.484 kb on - strand, within RR42_RS10910 at 2333.488 kb on + strand, within RR42_RS10910 at 2333.488 kb on + strand, within RR42_RS10910 at 2333.488 kb on + strand, within RR42_RS10910 at 2333.489 kb on - strand, within RR42_RS10910 at 2333.489 kb on - strand, within RR42_RS10910 at 2333.489 kb on - strand, within RR42_RS10910 at 2333.489 kb on - strand, within RR42_RS10910 at 2333.552 kb on - strand, within RR42_RS10910 at 2333.684 kb on - strand, within RR42_RS10910 at 2333.696 kb on - strand, within RR42_RS10910 at 2333.768 kb on - strand, within RR42_RS10910 at 2333.969 kb on - strand, within RR42_RS10910 at 2333.969 kb on - strand, within RR42_RS10910 at 2333.969 kb on - strand, within RR42_RS10910 at 2333.969 kb on - strand, within RR42_RS10910 at 2333.969 kb on - strand, within RR42_RS10910 at 2333.969 kb on - strand, within RR42_RS10910 at 2333.969 kb on - strand, within RR42_RS10910 at 2334.072 kb on - strand, within RR42_RS10910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml remove 2,332,542 - -0.8 2,332,564 - +2.2 2,332,564 - -0.4 2,332,582 - +0.0 2,332,586 - +0.5 2,332,586 - -0.1 2,332,586 - +0.1 2,332,586 - -1.1 2,332,635 - +0.4 2,333,297 - -3.1 2,333,297 - -0.2 2,333,387 - -0.3 2,333,484 - RR42_RS10910 0.19 -1.1 2,333,484 - RR42_RS10910 0.19 +0.0 2,333,484 - RR42_RS10910 0.19 -1.7 2,333,484 - RR42_RS10910 0.19 -0.2 2,333,484 - RR42_RS10910 0.19 -1.8 2,333,488 + RR42_RS10910 0.19 -0.3 2,333,488 + RR42_RS10910 0.19 +0.5 2,333,488 + RR42_RS10910 0.19 -0.4 2,333,489 - RR42_RS10910 0.19 -2.4 2,333,489 - RR42_RS10910 0.19 -1.4 2,333,489 - RR42_RS10910 0.19 -0.4 2,333,489 - RR42_RS10910 0.19 -1.1 2,333,552 - RR42_RS10910 0.26 -0.7 2,333,684 - RR42_RS10910 0.39 -0.1 2,333,696 - RR42_RS10910 0.40 -0.3 2,333,768 - RR42_RS10910 0.47 +0.2 2,333,969 - RR42_RS10910 0.68 -0.1 2,333,969 - RR42_RS10910 0.68 +0.5 2,333,969 - RR42_RS10910 0.68 -1.0 2,333,969 - RR42_RS10910 0.68 +0.3 2,333,969 - RR42_RS10910 0.68 -0.4 2,333,969 - RR42_RS10910 0.68 -0.8 2,333,969 - RR42_RS10910 0.68 -3.8 2,334,072 - RR42_RS10910 0.78 -0.7
Or see this region's nucleotide sequence