Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09290

Experiment: R2A with A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09290 and RR42_RS09295 are separated by 273 nucleotides RR42_RS09290: RR42_RS09290 - hypothetical protein, at 1,965,368 to 1,965,568 _RS09290 RR42_RS09295: RR42_RS09295 - phospholipase, at 1,965,842 to 1,966,546 _RS09295 Position (kb) 1965 1966Strain fitness (log2 ratio) -1 0 1at 1964.410 kb on - strandat 1964.935 kb on - strandat 1964.935 kb on - strandat 1964.935 kb on - strandat 1964.945 kb on - strandat 1964.945 kb on - strandat 1965.253 kb on + strandat 1965.254 kb on - strandat 1965.256 kb on + strandat 1965.496 kb on - strand, within RR42_RS09290at 1965.787 kb on - strandat 1965.787 kb on - strandat 1965.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.01 mg/ml
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1,964,410 - -0.3
1,964,935 - +0.1
1,964,935 - -0.3
1,964,935 - +0.1
1,964,945 - +1.0
1,964,945 - -0.4
1,965,253 + +0.2
1,965,254 - -0.8
1,965,256 + +0.4
1,965,496 - RR42_RS09290 0.64 +0.9
1,965,787 - -0.7
1,965,787 - +0.4
1,965,843 + +0.4

Or see this region's nucleotide sequence